Basic Information

Insect: Harpalus rubripes
Gene Symbol: Sall1
Assembly: GCA_963082715.1
Location: OY720449.1:38962112-38965174[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.8 1.5e+03 2.3 0.0 2 23 8 29 7 29 0.92

2 15 1.4 3.6e+02 4.2 2.0 1 23 548 570 548 570 0.92

3 15 0.47 1.2e+02 5.7 0.2 3 23 641 662 640 662 0.96

4 15 0.0012 0.31 13.8 3.1 1 23 670 692 670 692 0.97

5 15 0.011 2.9 10.8 0.4 3 23 696 716 694 716 0.92

6 15 0.004 1 12.2 2.4 1 23 722 744 722 744 0.98

7 15 6.5e-05 0.016 17.8 5.3 2 23 751 772 750 773 0.94

8 15 2.4 6e+02 3.5 3.9 5 23 786 804 785 804 0.97

9 15 0.00029 0.073 15.8 1.6 2 23 810 832 809 832 0.96

10 15 2 5.1e+02 3.7 0.2 2 23 848 868 847 868 0.94

11 15 2.1e-05 0.0053 19.4 1.0 1 20 874 893 874 896 0.94

12 15 0.00047 0.12 15.1 0.6 1 23 904 926 904 926 0.99

13 15 0.0069 1.7 11.5 6.9 1 23 932 954 932 954 0.97

14 15 1.6e-06 0.00039 22.9 3.9 1 23 960 982 960 982 0.98

15 15 0.00011 0.027 17.2 5.8 1 23 988 1010 988 1011 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.8	1.5e+03	2.3	0.0	2	23	8	29	7	29	0.92
2	15	1.4	3.6e+02	4.2	2.0	1	23	548	570	548	570	0.92
3	15	0.47	1.2e+02	5.7	0.2	3	23	641	662	640	662	0.96
4	15	0.0012	0.31	13.8	3.1	1	23	670	692	670	692	0.97
5	15	0.011	2.9	10.8	0.4	3	23	696	716	694	716	0.92
6	15	0.004	1	12.2	2.4	1	23	722	744	722	744	0.98
7	15	6.5e-05	0.016	17.8	5.3	2	23	751	772	750	773	0.94
8	15	2.4	6e+02	3.5	3.9	5	23	786	804	785	804	0.97
9	15	0.00029	0.073	15.8	1.6	2	23	810	832	809	832	0.96
10	15	2	5.1e+02	3.7	0.2	2	23	848	868	847	868	0.94
11	15	2.1e-05	0.0053	19.4	1.0	1	20	874	893	874	896	0.94
12	15	0.00047	0.12	15.1	0.6	1	23	904	926	904	926	0.99
13	15	0.0069	1.7	11.5	6.9	1	23	932	954	932	954	0.97
14	15	1.6e-06	0.00039	22.9	3.9	1	23	960	982	960	982	0.98
15	15	0.00011	0.027	17.2	5.8	1	23	988	1010	988	1011	0.96

Sequence Information

Coding Sequence: ATGGAAGGTTCAAACAATGTAACGTGCCCTGTGTGCACGTTATACCTTCGTCCAGGTATGACGCTGGAGGACCATTTAGCTACACATCCCAAACAAAAAGTCATAGAGGCTTTATTGCGAGTTACTCAATCTACGGATAAAAGTAATGAATGTACTAATATTCAATCCCAAGTACCACAACCGCAACAACAAGGGATGCCTCAAATAGCACAACAGGGAATTGCTCAAATAACACAACAACAAGGAATGCCTCAAATACCACAACAGGGAATTCCTCAAATACCACAACAACCAGGAATTCCTCAAATAACACAACAACAAGGAATGAGTATGCAAATGAATCAAATGCCCCAAAATCAATCGTTTATTTACCAACAGTTCACATCTACGACAGGCAATCAGTTCATTGGCGCCCCAATTAATCCATTGAACAACTTAAATCAACAACAATTCATTGCTATCCCTGCGTTCATTCCACCCCAAATGGTCTCTCCTTGCTTTTATCAGCAACAACAACAATTGCAAATAGTCACAGCATCTTCAAATTTTCCACCGTTTCTTCAGCGCCCACAAGAAATTTCTCCTATAACTCCGGCTACTTGTCAACCTACAGTTATAGAAATACAGGACCCAGTAACACCACCGAGATCTAGTGTTATTGCGGTGTCAGAAAAACGAACTCCTACAACTAGTGAATTAATTAGTGAAAAATTAATAGCTCTTGAAATGAACAGTAAAGACGATGTATCTATTGTTGTTGAAGATGAAGAGAAAAAGGAGGAAGAAGAGGAAATTGAAGAAAGTACAACAAATGAGactgaaaaagaaataaaagaggATGAAATAAAAGACGATGAAATAAAAGAGGATGAAATAAAAGACGATGAAATAAAAGAGGATGAAATTAAAGAAGATGAGGACGAATTAAGTAAAGCATGCCAGACTACGCAAGAAAAACACTCCCTGTCGAATGATACTACTACTGCAGCTGATAGTAACGAAGGTGTAACAATATTACCCGGCCCTGAAcctaattttgataaaaatcagATTGAGATCACACCCACCAccaattttgaaaacattcaTGAAAATATGGAATCTAACAACCAAAATCAGTCTAATAAGCCTATGATGCTAGATGTAtctactttaaattttattctcccGAATGATATACCTGAACAAGATGTGGAAATGGAAAACGAGAATGATAAACAAGACGAACCAATTTTGGTGAACATAGACGACGAATCTTTAAAAGATATAAACATTTCTCACAAATTAGGCGTATCAGATTTCGATGATGAGGACGACAGATTATTCGATGAATTGTCCCACCAAAGTTTAAACATCCGAGCAGATGAGAAAATGCCTGCAAGAGGAGAACTTTCCGAACAAGAAAGTAACGGAGCGAGTGAAATTGGCTGGGGAAGTAGAATTTATCAGGAAGGAAGTTCTGGTATTTCAGCTTCTTACGACCTAATAGCTCGAGAAAGCTGGGAAGCTTCAGATTGTTCAGACTCTGAAATGCCTCCTCTTCAAAGTAGAATTCAACCACCAATGGACTATAACGCTGAAGATGTTGATGAACCTGACCCTATCTTCACAGACGAAAGAGATGAGAAAACTTCTTTTACTTTTGACTGTTCAACTTGCGAACAATCTTTCAGGTGTCCTAAAGAAAGAAGAGTTCATCAAGCGGAGCATCAAgcagatgatgatgatgatgatgatgagaATTCAACTAGTAGTAGTTCCAGTAGTGTAAGTGAAGATTCTCCTAGgacaagtattaaatttaaagatatagaaaaattatcgacaaatgaagaagataaaaatgaaattaaagcaGAACTTGCAGATGAAAAGCCATTAATAGAAGATGCAGACATAGAAGAAAGTGAACTTCTTTTGTGCAATATTTGTGGAGAATTACTACCTTCTATGAAAGACTTAACTGTTCATAACAAAAAACAACACAATATTggattaaatcaaaattttatttgcaaaacATGCAAAGAACCATTTCATAGGCAAAGGgattatataaaacatttaaaaattcatcCATTAGAATGTATAATatgtagtaaattattttttaaacccGCGAATTTAAAAGTGCATCTTAAGCGGCATTCTGGAGATAAACCGCATAAGTGTGAAATATGTCTTAAATCATTTTTCGCTAAACAAAAATTACGAGAACATTTAAATATACACAATAATGTATCTCCAATTAAATGTACACAGTGTGATGAATCGTTTAAACGTTATTCTAATCTCATACAACACAGGAATCAtcatcatttaaatattaggaAGAAAACTAGAGACTATATTTGTTATTGCGGGGAAATATGTCATTCCAAAAGTAAGTTTAACTGGCATAAAGAAACACATGAAACAAAGCCTAAGTCGTGCATGTATTGCAACGAAAAGTTTATACATATAGCTAGTTTAACTCGTCACATTCGCCGGGCCCACAACAATCATTACGTTCCAGATGAGAACAGAAAATGCGAGAACGTAGAATGCGATATATGTAAAGGAGTTTATTTAAAGTCCAGTTTAGATGCTCATCTACACATTCACACTGGCAAAAAGCCCTATACATGCACTATTTGTAATAAGGAATTCACTACAAAGTGGAATTTGAAACTCCATAAGTGGATCCATGCTGCACCGACTTCAAAACCGTTTAAATGCGATGTCTGCCAAAACGCGTATTTCAGGGAATCCGACTACAACGCTCATATGAATTCTCATCGTAGTGTAAAGCCGTATACATGCAATTATTGTGGGTGTAAGTTTATTCGTAAATACAACTGCATCAGACATGTTAAAGAGCATGAGGAAAATAAGAATTTCACATGTGAGGTTTGTAATAAGAGTTTCCATCGGTCGTATTATCTTAAAGAGCATATGAGAGTACATACAGGTGTTAGACCATATTCGTGCAATATCTGTGGGAAAACGTCCACAACTAAGTCAAATCAtaataaacatatgaaaattcatcaTGCTAGGGAACCCGTCACTACAGAGggataa
Protein Sequence: MEGSNNVTCPVCTLYLRPGMTLEDHLATHPKQKVIEALLRVTQSTDKSNECTNIQSQVPQPQQQGMPQIAQQGIAQITQQQGMPQIPQQGIPQIPQQPGIPQITQQQGMSMQMNQMPQNQSFIYQQFTSTTGNQFIGAPINPLNNLNQQQFIAIPAFIPPQMVSPCFYQQQQQLQIVTASSNFPPFLQRPQEISPITPATCQPTVIEIQDPVTPPRSSVIAVSEKRTPTTSELISEKLIALEMNSKDDVSIVVEDEEKKEEEEEIEESTTNETEKEIKEDEIKDDEIKEDEIKDDEIKEDEIKEDEDELSKACQTTQEKHSLSNDTTTAADSNEGVTILPGPEPNFDKNQIEITPTTNFENIHENMESNNQNQSNKPMMLDVSTLNFILPNDIPEQDVEMENENDKQDEPILVNIDDESLKDINISHKLGVSDFDDEDDRLFDELSHQSLNIRADEKMPARGELSEQESNGASEIGWGSRIYQEGSSGISASYDLIARESWEASDCSDSEMPPLQSRIQPPMDYNAEDVDEPDPIFTDERDEKTSFTFDCSTCEQSFRCPKERRVHQAEHQADDDDDDDENSTSSSSSSVSEDSPRTSIKFKDIEKLSTNEEDKNEIKAELADEKPLIEDADIEESELLLCNICGELLPSMKDLTVHNKKQHNIGLNQNFICKTCKEPFHRQRDYIKHLKIHPLECIICSKLFFKPANLKVHLKRHSGDKPHKCEICLKSFFAKQKLREHLNIHNNVSPIKCTQCDESFKRYSNLIQHRNHHHLNIRKKTRDYICYCGEICHSKSKFNWHKETHETKPKSCMYCNEKFIHIASLTRHIRRAHNNHYVPDENRKCENVECDICKGVYLKSSLDAHLHIHTGKKPYTCTICNKEFTTKWNLKLHKWIHAAPTSKPFKCDVCQNAYFRESDYNAHMNSHRSVKPYTCNYCGCKFIRKYNCIRHVKEHEENKNFTCEVCNKSFHRSYYLKEHMRVHTGVRPYSCNICGKTSTTKSNHNKHMKIHHAREPVTTEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01105041; iTF_00769106;
90% Identity: -
80% Identity: -