Basic Information

Insect: Harpalus rufipes
Gene Symbol: ECU03_0790
Assembly: GCA_951394225.1
Location: OX596281.1:23559612-23563996[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00096 0.21 13.9 0.5 1 23 65 87 65 87 0.98

2 14 1.3 2.7e+02 4.1 1.3 2 19 93 110 92 113 0.85

3 14 0.0024 0.53 12.7 2.2 1 23 126 148 126 148 0.95

4 14 0.0066 1.4 11.3 0.4 3 23 153 174 152 174 0.94

5 14 0.0012 0.26 13.7 6.3 1 23 184 206 184 206 0.98

6 14 0.12 27 7.3 3.5 2 23 240 261 239 261 0.97

7 14 0.014 3 10.3 1.3 1 23 264 287 264 287 0.97

8 14 7.8e-06 0.0017 20.5 3.2 1 23 296 318 296 318 0.98

9 14 4.3e-05 0.0093 18.2 0.7 2 22 325 345 324 348 0.89

10 14 0.00011 0.024 16.9 5.2 2 23 359 381 358 381 0.95

11 14 0.0004 0.087 15.2 3.1 1 23 388 410 388 410 0.98

12 14 8.8e-06 0.0019 20.4 0.4 3 23 419 440 417 440 0.94

13 14 6.5e-08 1.4e-05 27.1 0.8 2 23 447 468 446 468 0.97

14 14 1.3e-05 0.0029 19.8 4.2 1 23 474 497 474 497 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00096	0.21	13.9	0.5	1	23	65	87	65	87	0.98
2	14	1.3	2.7e+02	4.1	1.3	2	19	93	110	92	113	0.85
3	14	0.0024	0.53	12.7	2.2	1	23	126	148	126	148	0.95
4	14	0.0066	1.4	11.3	0.4	3	23	153	174	152	174	0.94
5	14	0.0012	0.26	13.7	6.3	1	23	184	206	184	206	0.98
6	14	0.12	27	7.3	3.5	2	23	240	261	239	261	0.97
7	14	0.014	3	10.3	1.3	1	23	264	287	264	287	0.97
8	14	7.8e-06	0.0017	20.5	3.2	1	23	296	318	296	318	0.98
9	14	4.3e-05	0.0093	18.2	0.7	2	22	325	345	324	348	0.89
10	14	0.00011	0.024	16.9	5.2	2	23	359	381	358	381	0.95
11	14	0.0004	0.087	15.2	3.1	1	23	388	410	388	410	0.98
12	14	8.8e-06	0.0019	20.4	0.4	3	23	419	440	417	440	0.94
13	14	6.5e-08	1.4e-05	27.1	0.8	2	23	447	468	446	468	0.97
14	14	1.3e-05	0.0029	19.8	4.2	1	23	474	497	474	497	0.97

Sequence Information

Coding Sequence: ATGATTGAaacaatacataattttgaTTCTGCTGAAAAGGATGAAGCTTTAGGATTCATTCGTAAATGTATAGAACAATCAAAATCAACTAAGAATTCATCTAAATGTATTAAAACCAATACTCGACCTAAACGTAAAATTCGGAAAAAACTTATGTTTAAAAACATATCTTCCTTCATTAAAAAACCAATATTTAAGTGCCGAGTTTGTGGCATTTCAAATAAGACTAAATCAGCTTTATTGAAACATTTAGGGACACATATTGGCACTCCTATTTCTTGTAAAAATTGCAGAAGGGATTTTAATAATAGGGCTTCTTTTCTGTGTCATATTTCactaaaaatgtgttataaaaagaGATTAATCATGAAGGAATATCACTGCACTCAATGTCCAAAAGtatttgggtataaaagacaATTTGACAAACATGTGGAAGgacataaaagaaataattgtacATACTGTGATACTAAAATAACTAGAAGAAAAGAATTAGCAGATCATTTGCTAAATGTTCACTCTATTAAATTAGAGCGTACTATTATGTTTAAATGTGATTTCTGCGAAAAAAGGTATGTAAAAAAGCGATCTTTGTATCACCATATGAAACAACACgctgaaaataaaattgtatgtatgGAATGCGGATTTCTTAGCAGCACTGGCGAAGAAAATGATCTTCATTTGAAAGATCACGAAAAAAATCGTCCGTGGAAGTGCAATAAATGTGGAGACAGATTTTTGCGAAGGCAGCAATACGTACATCAcataaagAGGCACGATCGGTATAAATGTGTAACTTGCAACGAAACTTTTGCATTAAAAAAACGCGTTTTGCGTCATAGACAGAGAGGACATTCTGTTTTAGGACTAGAACCTCAACATAAATGCCCTCATTGTCCGATGGCTTTTCAGAGGAAGTTGAACTTGCAAATTCACATTCGGAAACATACAGaTGAAAAATTAATGTCGTGCAAATATTGTGATAAAAACTTTCGCTCcccatatttatatttcaagcaCATTGCGTCTACAGTTCACGATATGAATTCCCCAGAAACCAAACAATTAGTTTGTGAAAATTGCGGAAAATCTTTTTCTAAACAACACCATTTGGACCAACACTTACACCGAGTTCATAAACAAGCCAAACAAACATTTACATGCGAATACTGTGGTCTCAAATGTTCTAATCGCACAAATATGGATCGACACCTAAATTTACATcttgaaaacaaaaaagaagTAATTTGTGAACACTGTGGACAAGCATTTTACAATCAATCTAGCTTGAAAGATCATATAAGTTACGTCCACTCCCAAGAAAAAGTCTTAAAATGTTCGCAATGCGACAAAGCATTTAAAAGAAACTCAGAACTTGTAAGACATATGGCCACACACTCAGAATTACGTCCGCATGTTTGTGAAACTTGTGGTGTATCTTACAAACGACAAACTCATCTCCGAAGACATCAAGAAACACAACACGGAGTTGTTCAGAAATCCAGACGAGTTCAGAGGTTGAAAAAAGGTGAAAATGGGGAATTAGTACCAATACCCGAAGAGAAAAAGTCAAAATCTACTCAAAAGAAACCCGAACCAGTGGTTAACAAtcaattattttccataatGGACGCGCAATCGGGTGAAATGGTTACGTTTACCATACCAGAAAGTATTGAAACTCAAGATTTAGCCATTTTAAACATCAAACAAGAATTGATTCAAACAGTGGAACTACCAAATTTGGTTTTAAACACCAATGATAATATTATTCTTACTAATGACCAATTGGTTAACGCTTTGGAACCAAGCTTTTCCAATAATTTTCTAACTGGAGAATTACCACAAATTGAGAATATTTTAGCACAACCAGCGGTTCAAAATCAAACTACTTGTGATATTTTGTTGCCCGAAAATCGAATTATGAATTTGAGTGATTATTCCCAAAACCCTTATCagtttatgtaa
Protein Sequence: MIETIHNFDSAEKDEALGFIRKCIEQSKSTKNSSKCIKTNTRPKRKIRKKLMFKNISSFIKKPIFKCRVCGISNKTKSALLKHLGTHIGTPISCKNCRRDFNNRASFLCHISLKMCYKKRLIMKEYHCTQCPKVFGYKRQFDKHVEGHKRNNCTYCDTKITRRKELADHLLNVHSIKLERTIMFKCDFCEKRYVKKRSLYHHMKQHAENKIVCMECGFLSSTGEENDLHLKDHEKNRPWKCNKCGDRFLRRQQYVHHIKRHDRYKCVTCNETFALKKRVLRHRQRGHSVLGLEPQHKCPHCPMAFQRKLNLQIHIRKHTDEKLMSCKYCDKNFRSPYLYFKHIASTVHDMNSPETKQLVCENCGKSFSKQHHLDQHLHRVHKQAKQTFTCEYCGLKCSNRTNMDRHLNLHLENKKEVICEHCGQAFYNQSSLKDHISYVHSQEKVLKCSQCDKAFKRNSELVRHMATHSELRPHVCETCGVSYKRQTHLRRHQETQHGVVQKSRRVQRLKKGENGELVPIPEEKKSKSTQKKPEPVVNNQLFSIMDAQSGEMVTFTIPESIETQDLAILNIKQELIQTVELPNLVLNTNDNIILTNDQLVNALEPSFSNNFLTGELPQIENILAQPAVQNQTTCDILLPENRIMNLSDYSQNPYQFM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00767476; iTF_01104986;
90% Identity: iTF_00767476; iTF_01104986;
80% Identity: -