Basic Information

Insect: Harpalus rufipes
Gene Symbol: su(Hw)
Assembly: GCA_951394225.1
Location: OX596289.1:8150560-8163590[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00022 0.048 16.0 0.7 2 21 138 157 137 158 0.94

2 13 0.0056 1.2 11.5 0.3 1 23 193 216 193 216 0.96

3 13 4.5e-05 0.0098 18.1 1.9 2 23 221 242 220 242 0.96

4 13 0.0013 0.28 13.6 1.1 3 21 249 267 247 268 0.86

5 13 1.4e-07 3.1e-05 26.0 0.4 1 23 279 301 279 301 0.98

6 13 4.7e-05 0.01 18.1 0.1 1 23 311 333 311 333 0.98

7 13 6.6e-06 0.0014 20.7 0.2 1 23 339 361 339 361 0.98

8 13 5.7e-05 0.012 17.8 1.6 1 23 367 389 367 389 0.99

9 13 1.1e-05 0.0025 20.0 3.5 1 23 395 417 395 417 0.95

10 13 1.9e-05 0.0042 19.3 1.5 1 23 423 446 423 446 0.96

11 13 2e-05 0.0044 19.2 0.7 1 23 452 474 452 474 0.91

12 13 9e-07 0.0002 23.5 4.5 1 23 480 502 480 502 0.98

13 13 4.4e-07 9.7e-05 24.4 1.8 2 23 509 531 509 531 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00022	0.048	16.0	0.7	2	21	138	157	137	158	0.94
2	13	0.0056	1.2	11.5	0.3	1	23	193	216	193	216	0.96
3	13	4.5e-05	0.0098	18.1	1.9	2	23	221	242	220	242	0.96
4	13	0.0013	0.28	13.6	1.1	3	21	249	267	247	268	0.86
5	13	1.4e-07	3.1e-05	26.0	0.4	1	23	279	301	279	301	0.98
6	13	4.7e-05	0.01	18.1	0.1	1	23	311	333	311	333	0.98
7	13	6.6e-06	0.0014	20.7	0.2	1	23	339	361	339	361	0.98
8	13	5.7e-05	0.012	17.8	1.6	1	23	367	389	367	389	0.99
9	13	1.1e-05	0.0025	20.0	3.5	1	23	395	417	395	417	0.95
10	13	1.9e-05	0.0042	19.3	1.5	1	23	423	446	423	446	0.96
11	13	2e-05	0.0044	19.2	0.7	1	23	452	474	452	474	0.91
12	13	9e-07	0.0002	23.5	4.5	1	23	480	502	480	502	0.98
13	13	4.4e-07	9.7e-05	24.4	1.8	2	23	509	531	509	531	0.97

Sequence Information

Coding Sequence: ATGTCAGAGGCTAGTGAAGGCACCAGCATTAAGGAAGAGATTGTCAAAACCGAAGCCAACAACTTCGATAAAGGCACCACACTCCTTGCAAACATTCCTATAGGAATAGGAGAATCTATCGATATCCAAAATGCTGTTGTTATTCTGCCAGAGAATGCCACGGTTTCTAGTGTGCACCAAACAGAAAATATGGTTGTCCTCGCCAGAATGACTAACGACGGAGAGTTAATTACTCCGGATATGGATGGAGTTGAAGCAGAAACTATAGCGGAAGAAATAGTTGAGGATGAAGGGGATTTGAAGTATGAAGGTCAGGATGAAAACGAGAACGGAGATGATACTGTTGTTGCTGAAGATGTCGATGATGTTACCATGGAGGAAGAGGAGGAAGATTTCGAGTTGGAACCGAATCAGTGTTCTAATTGCCGAAAGATCTTTAAGTCACAAACAGGTCTCAAGCGCCACTTGCTGTTGTGCATTCCCGACCCTGAAGACGAAGACCAAGACGACCCTCTGGCCTTCGAGATCTGCCACTGTTGTGGCGAACCTCTCGACACCGCGCATAAGGTCGGCGACTACTCGTGCCCCAAGTGCGAGAAGCTGTTCGTCTCCGAAAATGCCAGAGAGCGTCATAACCGCATCGTGCATTGCGATGGTCTCACCTGCCCTGACTGCGAGAAAAAATGCACCAGCCGACGAGAACTCGAGAAGCATATTTTCATACACATGGAGAAGCCTTTTGCCTGCATCAGGTGTAATAAGGTCTTCACCAGGAAGTATCATCTCGATAGACATGTGCAGCAGACTGGGTGTGATGGCAATCCCAAGGCTCAGTATCAGTGCCAGGTGTGTGATAAAATTTTCGCCCGTCGCGACAATTTGCGCGACCATCTCCGCGCCCATGCCGGTCATGTTAAACGTAAAAAGGTCTTCCCTTGCCCGGAATGTCAGAAAGAGTTTCATGGGGCTGCTTTACTGGCAATTCACTTAAGGACGCACACTGGTGAAAGACCATTCCCATGTCCTATGTGTCCAAAACGATTCCCTTCCAGCGGCGCTATGAAGAAACACAGTCGAATGCATACGGGCGAACGGCCGTACGAGTGTTCTACGTGCCATGCTCGGTTCGCTGCTAAAGAAACCCTGAACCGCCACGTCCGCACGCATACAGGCCAAAAACCGCATTCGTGCCAATTCTGCGGCAAATCTTTCATCCAAGCTTCTCAGCTACGCGCACATATCTTCCATCACACTGGAGAGAACGGGTTCACCTGTGAACATTGTGGCAAAGCGTTCAACAGGCGCGCCAGGCTCGTCACTCATGTTAAATATGTCCATGAAGGAGCTGTTCCTTTCGAATGCGATACTTGTAAGAAGACATTTGTGAGGAAAGAGGATCTAGCGAGGCATTCTGTACTGCATAGTGGACTTAAACcgCACGAGTGCGATATTTGCCATAAATCGTTCGCAATGAAATCTTCCTTGAAAACTCACATGAACACTCATCGTAAGGAGCAACCTCGCAGTTGCGACGAATGCGGCCGCGCTTTCATTCGCCAGGACTGCCTCATTCGTCATATGCGTACTAAACATCGCGACCAACTAGAAGATATTTTAGCAGGCGCGGAAAAGAAACGTCTTCAGCAACAACTCCTCGCTGCCGCTACCGAAGCTGCTGGAGAACAGAAACCCAGCATTGCTGAGTCTGGTGTTTGGTCGGAATTGACCCTCACAGATTCTATCAAAGAATTGTTGACATTATTGGTGGATGAAGCTACGCTGAGAGCTTTCGGGTGGCCAGATACTCCAGTGGATAAACTATTGGATTCGGTTATTAAAAGATGTGGACATAAACCAGCTTCAGAGGATGATTTTGATTATATTGGAAGGATGAGGGAGAATGCTAAGCTGCTATTTACAGTAGTTATTGACGATTCGGCGGTTAAAAGTTTGTTAAACAACCAAACGGTTGATGAagttattttacatgttttgcGCCTGGCAAAAGCTGAGTAA
Protein Sequence: MSEASEGTSIKEEIVKTEANNFDKGTTLLANIPIGIGESIDIQNAVVILPENATVSSVHQTENMVVLARMTNDGELITPDMDGVEAETIAEEIVEDEGDLKYEGQDENENGDDTVVAEDVDDVTMEEEEEDFELEPNQCSNCRKIFKSQTGLKRHLLLCIPDPEDEDQDDPLAFEICHCCGEPLDTAHKVGDYSCPKCEKLFVSENARERHNRIVHCDGLTCPDCEKKCTSRRELEKHIFIHMEKPFACIRCNKVFTRKYHLDRHVQQTGCDGNPKAQYQCQVCDKIFARRDNLRDHLRAHAGHVKRKKVFPCPECQKEFHGAALLAIHLRTHTGERPFPCPMCPKRFPSSGAMKKHSRMHTGERPYECSTCHARFAAKETLNRHVRTHTGQKPHSCQFCGKSFIQASQLRAHIFHHTGENGFTCEHCGKAFNRRARLVTHVKYVHEGAVPFECDTCKKTFVRKEDLARHSVLHSGLKPHECDICHKSFAMKSSLKTHMNTHRKEQPRSCDECGRAFIRQDCLIRHMRTKHRDQLEDILAGAEKKRLQQQLLAAATEAAGEQKPSIAESGVWSELTLTDSIKELLTLLVDEATLRAFGWPDTPVDKLLDSVIKRCGHKPASEDDFDYIGRMRENAKLLFTVVIDDSAVKSLLNNQTVDEVILHVLRLAKAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01226027;
90% Identity: iTF_00767425; iTF_01104941;
80% Identity: -