Basic Information

Insect: Harpalus rubripes
Gene Symbol: su(Hw)
Assembly: GCA_963082715.1
Location: OY720461.1:41919372-41928478[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00025 0.064 16.0 0.7 2 21 135 154 134 155 0.94

2 13 0.0088 2.2 11.1 0.3 1 23 190 213 190 213 0.96

3 13 1.4e-05 0.0035 20.0 1.8 2 23 218 239 217 239 0.96

4 13 0.0015 0.37 13.6 1.1 3 21 246 264 244 265 0.86

5 13 1.6e-07 4.1e-05 26.0 0.4 1 23 276 298 276 298 0.98

6 13 5.4e-05 0.014 18.1 0.1 1 23 308 330 308 330 0.98

7 13 7.7e-06 0.002 20.8 0.2 1 23 336 358 336 358 0.98

8 13 0.00011 0.028 17.1 0.3 1 23 364 386 364 386 0.99

9 13 1.3e-05 0.0033 20.0 3.5 1 23 392 414 392 414 0.95

10 13 2.2e-05 0.0056 19.3 1.5 1 23 420 443 420 443 0.96

11 13 2.4e-05 0.006 19.2 0.7 1 23 449 471 449 471 0.91

12 13 1e-06 0.00026 23.5 4.5 1 23 477 499 477 499 0.98

13 13 5.2e-07 0.00013 24.4 1.8 2 23 506 528 506 528 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00025	0.064	16.0	0.7	2	21	135	154	134	155	0.94
2	13	0.0088	2.2	11.1	0.3	1	23	190	213	190	213	0.96
3	13	1.4e-05	0.0035	20.0	1.8	2	23	218	239	217	239	0.96
4	13	0.0015	0.37	13.6	1.1	3	21	246	264	244	265	0.86
5	13	1.6e-07	4.1e-05	26.0	0.4	1	23	276	298	276	298	0.98
6	13	5.4e-05	0.014	18.1	0.1	1	23	308	330	308	330	0.98
7	13	7.7e-06	0.002	20.8	0.2	1	23	336	358	336	358	0.98
8	13	0.00011	0.028	17.1	0.3	1	23	364	386	364	386	0.99
9	13	1.3e-05	0.0033	20.0	3.5	1	23	392	414	392	414	0.95
10	13	2.2e-05	0.0056	19.3	1.5	1	23	420	443	420	443	0.96
11	13	2.4e-05	0.006	19.2	0.7	1	23	449	471	449	471	0.91
12	13	1e-06	0.00026	23.5	4.5	1	23	477	499	477	499	0.98
13	13	5.2e-07	0.00013	24.4	1.8	2	23	506	528	506	528	0.97

Sequence Information

Coding Sequence: ATGTCAGAAGCTAGCGAAGGCGCCAACATCAAACAAGAGATTGTCAAAACCGAAGCCAACAACTTAGGCACCACACTCCTTGCAGACATTCCGATAGGGCAGTCCATCGATATCCAAAATGCTGTTGTTATCATGCCAGAGAATGCCGCGGTTTCTAATGTACACCATACGGAAAATATGGTTGTTCTCGCTAGAATGACAAACGAAGGAGAGTTAATTACTCCTGATATGGATTTGGGTACAGTTGAAGCAGAAACTATAGCGGAAGAAATAATTGAGGATGAAGAGGATTTGAAGTTTGAGGATGAAAATGAGAATGCCGGAAATGATACTGTCGTTGCTGAAGATGTCGATGATGTTACCATGGAGGAAGAGGAAGAAGATTTGGAGTTGGAACCCAATCAGTGTTCTAATTGCCGAAAGATCTTTAAGTCACAAACAGGTCTAAAGCGCCACTTACTCTTGTGCATCCCTGACCCCGAAGACGAAGAACAAGACGACCCTCTGGCCTTCGAGATCTGCCACTGTTGCAGCGAACCTCTCGACACCGCGCATAAGGTCGGCGACTTCTCGTGCCCCAAGTGCGAGAAGTTATTCGTTTCTGAAAATGCCAGAGAACGTCACAACCGAATCGTACATTGCGATGGTCTCACATGTCCTGACTGCGACAAGAAATGCTCCAGCCGACGAGAACTCGAGAAGCACATCTTCATACACATGGAGAAGCCATTCGCCTGCATCAGGTGCAATAAGGTCTTCACCAGGAAGTATCATCTCGATAGGCATGTGCAGCAGACTGGGTGTGATGGAAATCCCAAGGCCCAGTATCAGTGCCAGGTGTGCGATAAAATTTTCGCCCGTCGCGACAACTTGCGCGACCATCTTCGCGCCCATGCTGGTCACGTTAAACGTAAGAAGGTCTTCCCTTGTCCAGAGTGCCAGAAAGAGTTTCATGGTGCTGCTTTGCTGGCAATTCACTTAAGGACGCACACTGGTGAAAGACCATTTCCATGTCCTATGTGCCCAAAACGATTCCCTTCCAGCGGCGCTATGAAAAAACACAGCCGAATGCACACGGGCGAACGACCATACGAGTGTGGCACGTGCCAAGCTCGGTTCGCTGCAAAAGAAACCCTGAACCGCCACGTCCGCACACATACGGGCCTAAAGCCGCATTCCTGTCAATTCTGCGGTAAATCTTTCATCCAAGCTTCCCAACTCCGCGCACATATCTTCCATCATACTGGAGAAAACGGCTTCACGTGTGAACATTGTGGCAAAGCGTTCAACAGGCGCGCCAGGCTTGTCACTCATGTCAAATATGTCCATGAAGGAGCTGTTCCTTTCGAATGTGATACGTGTAAGAAGACATTTGTGAGGAAGGAGGATCTGGCGAGGCATTCTGTTCTGCACAGTGGACTTAAACCGCATGAGTGCGATATATGCCACAAATCATTCGCAATGAAATCTTCCTTAAAAACACACATGAATACCCATCGAAAGGAGCAACCCCGCAGTTGCGACGAATGCGGCCGCGCTTTTATCCGCCAAGACTGCCTCATTCGTCACATGCGCACCAAACATCGCGACCAACTCGAGGATATTTTAGCAGGCGCGGAGAAAAAACGCCTTCAGCAGCAACTCCTCGCTGCCGCCACTGAAGCTGCTGGCGAACAGAAACCCAGCATTGCTGAGTCTGGTGTTTGGTCGGAATTGACCCTGACGGATTCTATCAAGGAGTTGTTGACGTTGTTGGTAGATGAGGCTACGCTTAGGGCCTTCGGATGGCCGGATACTCCAGTTGATAAATTATTGGATTCTGTTATTAAAAGATGTGGACATAAACCCGCTTCAGAAGATGATTTTGATTATATTGGAAGGATGAGAGAGAATGCTAAGCTGTTGTTTACAGTAGTTATTGACGATTCGGCGGTTAAAAGTTTGTTGAACAACCAGACGGTTGATGAAGTTATTTTACATGTTTTGCGCCTGGCAAAAGCtgagtaa
Protein Sequence: MSEASEGANIKQEIVKTEANNLGTTLLADIPIGQSIDIQNAVVIMPENAAVSNVHHTENMVVLARMTNEGELITPDMDLGTVEAETIAEEIIEDEEDLKFEDENENAGNDTVVAEDVDDVTMEEEEEDLELEPNQCSNCRKIFKSQTGLKRHLLLCIPDPEDEEQDDPLAFEICHCCSEPLDTAHKVGDFSCPKCEKLFVSENARERHNRIVHCDGLTCPDCDKKCSSRRELEKHIFIHMEKPFACIRCNKVFTRKYHLDRHVQQTGCDGNPKAQYQCQVCDKIFARRDNLRDHLRAHAGHVKRKKVFPCPECQKEFHGAALLAIHLRTHTGERPFPCPMCPKRFPSSGAMKKHSRMHTGERPYECGTCQARFAAKETLNRHVRTHTGLKPHSCQFCGKSFIQASQLRAHIFHHTGENGFTCEHCGKAFNRRARLVTHVKYVHEGAVPFECDTCKKTFVRKEDLARHSVLHSGLKPHECDICHKSFAMKSSLKTHMNTHRKEQPRSCDECGRAFIRQDCLIRHMRTKHRDQLEDILAGAEKKRLQQQLLAAATEAAGEQKPSIAESGVWSELTLTDSIKELLTLLVDEATLRAFGWPDTPVDKLLDSVIKRCGHKPASEDDFDYIGRMRENAKLLFTVVIDDSAVKSLLNNQTVDEVILHVLRLAKAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01226027;
90% Identity: iTF_00769013;
80% Identity: -