Basic Information

Insect: Harpalus rufipes
Gene Symbol: -
Assembly: GCA_951394225.1
Location: OX596277.1:2729943-2732716[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00021 0.046 16.0 0.5 1 23 131 154 131 154 0.92

2 16 0.00024 0.053 15.8 1.0 1 23 159 181 159 181 0.97

3 16 0.00012 0.026 16.8 0.1 1 23 197 219 197 219 0.98

4 16 0.00033 0.072 15.4 3.5 1 23 233 256 233 256 0.97

5 16 4.2e-05 0.0091 18.2 1.0 1 23 272 294 272 294 0.98

6 16 0.00024 0.052 15.9 0.7 1 23 308 330 308 330 0.99

7 16 0.0029 0.63 12.4 0.6 1 23 343 366 343 366 0.96

8 16 9.2e-06 0.002 20.3 0.1 1 23 386 410 386 410 0.96

9 16 0.022 4.9 9.6 0.7 2 23 417 439 416 439 0.94

10 16 4.2e-07 9.1e-05 24.5 2.7 1 23 445 467 445 467 0.98

11 16 0.0025 0.55 12.6 0.3 1 23 473 495 473 495 0.98

12 16 2.6e-05 0.0057 18.9 0.8 1 23 501 523 501 523 0.98

13 16 0.0023 0.5 12.7 1.1 1 23 529 551 529 551 0.98

14 16 0.00088 0.19 14.1 0.9 1 23 557 579 557 579 0.98

15 16 1.4e-07 3e-05 26.0 1.8 1 23 585 607 585 607 0.97

16 16 5e-06 0.0011 21.1 1.1 1 23 613 635 613 635 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00021	0.046	16.0	0.5	1	23	131	154	131	154	0.92
2	16	0.00024	0.053	15.8	1.0	1	23	159	181	159	181	0.97
3	16	0.00012	0.026	16.8	0.1	1	23	197	219	197	219	0.98
4	16	0.00033	0.072	15.4	3.5	1	23	233	256	233	256	0.97
5	16	4.2e-05	0.0091	18.2	1.0	1	23	272	294	272	294	0.98
6	16	0.00024	0.052	15.9	0.7	1	23	308	330	308	330	0.99
7	16	0.0029	0.63	12.4	0.6	1	23	343	366	343	366	0.96
8	16	9.2e-06	0.002	20.3	0.1	1	23	386	410	386	410	0.96
9	16	0.022	4.9	9.6	0.7	2	23	417	439	416	439	0.94
10	16	4.2e-07	9.1e-05	24.5	2.7	1	23	445	467	445	467	0.98
11	16	0.0025	0.55	12.6	0.3	1	23	473	495	473	495	0.98
12	16	2.6e-05	0.0057	18.9	0.8	1	23	501	523	501	523	0.98
13	16	0.0023	0.5	12.7	1.1	1	23	529	551	529	551	0.98
14	16	0.00088	0.19	14.1	0.9	1	23	557	579	557	579	0.98
15	16	1.4e-07	3e-05	26.0	1.8	1	23	585	607	585	607	0.97
16	16	5e-06	0.0011	21.1	1.1	1	23	613	635	613	635	0.98

Sequence Information

Coding Sequence: ATGGCAGAAATTTCCACTGATCAATGCCGAACGTGTTTAACCAAAGAATCCGAATTGATATCTTTGGTTGCAGATCATGTAGTGTGTGATAAGGTTATGTCTGTTTtggaattaataaaaacatgtacttCTGCTCAGATTGAACTAGATGACGATTACCCACAATATGTGTGTCTGCAATGCATACATTCGGCCGAAAAGTCGTACGAATTCAGAATACAATGTGAGAAAGCTGATAATTCTTTGCGATCGAATGTAGAAGCATTTGATTGCGAAATTTCAGACGATAACTGCGAAAACTACGAAGTATTAGATCCAGAAGTTAAAACTGAGGATGAAAGTTATTTAACCattttacaaaacaatataaaaacagAAGAAGTCGATAATTTTTCGTGTACTATTTGCGATTTAAACTTTCCAACAGCAACTGCTCTTACAAAACACACTTCGTTTTCTCACCAGCCCAAATTTTATCAGTGTTCTCATTGTCCAGTTCGTTTTATATCGCGAGACTTGTTAGATAAACATGTTGTAAAACACAACAAtgataaacaaagaaaaaacaaaagaaaacgaAAAGTAGATTACGTTTGCGCCATTTGTGGTAAAAAATACGCAaatataacagttttaaataatcATGTACGAAAACATACCACCGatgaaaaatctaaaaaaaataatgctaaTACTTATATTTGTCATTCATGCGATCACCATTTTGTCAGCGCCGAAGATTTGCAATCGCACATGGAAAAGCTTCACGCACTTAAAAGCGAAGAAAAAGAAACTACTACGATTCCagctaaatttaaatgtaaatattgttataaaatattcacCGAAGAAGACGAATTGCGAGAACATTTAACAGTTCAcagtaaaaaaaagaaaaatacatcATCAAATAAAGTATCATACAAATGCAAAATTTGCAATTTAAGCACCAGATCTTTAGAGGAAATGAAAGATCATTTAGAAACGCACGATATAAACTCAAAAGACATATTCTCTCACTTATTTTATCAATGTGTTGAATGCGAACAAGTTTTCAACACAATTTACGAATTTTTCACGCATTCTTCTACAGTCCACGTCGGCACAAAAATCGAACATTCTACAGCGGGTACGCGTGTTGTTCGAAAACGTCCGTACACTTGCGACGTGCCAAACTGCGACAAATCTTTCCCTTCGCCGAGTGCGCTGAAAAAACATTCCATAAGCCACGAATCCCAATGGCCAAAGAAATGCAGATATTGTGATGCAGTTGTGAGCAAGTGGCATGAttatatgatacatttaaacGATAACCACGATGACAAAAAGACGTTTGTTTGTTCTCAGTGTGGGAAAAAGTTTTTCAGGGAGAGGAATTTGCAAAGTCACATGAAAACGCATAACGGCGAGAGGAATTATATGTGTGATTTTTGTGGATTTAGTTTTCTAGCGcagaataatttggtggCTCATAGAAGAATACATACCGGTGTCAAACCGTATAAATGTACTTATTGTCCTCAAGCCTTCGCCCAGCATGCGGGCCTACGCTCACATCTTCTAAATCACAACGGAGAAAAAAAACACGAATGCCCaacttgtttaaaaaaattcttacgaATTGGCGCGCTTAGAAATCACATCAAAACACACACAGGAGTCAAAGACTATGCTTGTCATATTTGCGGTGCTCGTTTCGGGGCTTCTTCAACTAGAAAAAAACATCTCTTAACTCACACTGGTGAAAGAAACCATATTTGTGATTATTGTGGAAAGGCGTTTTCTCGTCGTTCGAATCTTTCTGTTCATAGAAAAATTCATACCGGCGAAACACCGCATGTTTGTGACGTATGTGGAAAAGGATTTATTCAAGCGCATGTTTTGAGATCGCATATGAACACGCACAGAAAGAGAGGAGAACTGAAGAAAGATAAAACGGAAAAAATGCCTGGTGTTCAAGATGAAACGCCGGAAGACATTACTGTTTTAATTGAATTTGATTAA
Protein Sequence: MAEISTDQCRTCLTKESELISLVADHVVCDKVMSVLELIKTCTSAQIELDDDYPQYVCLQCIHSAEKSYEFRIQCEKADNSLRSNVEAFDCEISDDNCENYEVLDPEVKTEDESYLTILQNNIKTEEVDNFSCTICDLNFPTATALTKHTSFSHQPKFYQCSHCPVRFISRDLLDKHVVKHNNDKQRKNKRKRKVDYVCAICGKKYANITVLNNHVRKHTTDEKSKKNNANTYICHSCDHHFVSAEDLQSHMEKLHALKSEEKETTTIPAKFKCKYCYKIFTEEDELREHLTVHSKKKKNTSSNKVSYKCKICNLSTRSLEEMKDHLETHDINSKDIFSHLFYQCVECEQVFNTIYEFFTHSSTVHVGTKIEHSTAGTRVVRKRPYTCDVPNCDKSFPSPSALKKHSISHESQWPKKCRYCDAVVSKWHDYMIHLNDNHDDKKTFVCSQCGKKFFRERNLQSHMKTHNGERNYMCDFCGFSFLAQNNLVAHRRIHTGVKPYKCTYCPQAFAQHAGLRSHLLNHNGEKKHECPTCLKKFLRIGALRNHIKTHTGVKDYACHICGARFGASSTRKKHLLTHTGERNHICDYCGKAFSRRSNLSVHRKIHTGETPHVCDVCGKGFIQAHVLRSHMNTHRKRGELKKDKTEKMPGVQDETPEDITVLIEFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00767420;
90% Identity: iTF_01104933;
80% Identity: -