Hruf029589.1
Basic Information
- Insect
- Harpalus rufipes
- Gene Symbol
- MBD-R2
- Assembly
- GCA_951394225.1
- Location
- OX596280.1:40016558-40022143[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-16 2.2e-12 48.3 0.0 6 69 414 475 409 484 0.86 2 2 1.7 1.7e+04 -2.6 0.0 41 58 1060 1077 1060 1090 0.84
Sequence Information
- Coding Sequence
- atgggTCGTAAGTGTAATGTATTAGATTGTCCATCAGATTCAAATCGAATCGAAGATAATGGTGTAACATTTCATAAAATGCCATTTCATCCAGATTTACGACCAAAATGGATTGAATTATGTCGCATTCCTAAAGAAAGGCAAACAAACAAAGTGATTTATGTATGTTCAAGACATTTTAGACGAACAGATTTCTGTAATTTCAAAGGTACAAAGTATATGCTTCGGCAGGGTGCTTTGCCCTCAGTATTTCCGTGGACTAAAAGCATTATAATACCACCTCAAACTAGTAAAACTACATTACcattggaagaagaaagtaATTCTATAGAAATTAAAACCGAAGAACCTGAAGATGAGAAGTCAAATAATGAAGAGTTAGGTGAAGTAGAAGTCAAAATAGAAATTCCTGAAGAAcctgaagaagaaaaagaaataccCTCGGAAAaacctaaaataaaaaaagatatttcTCCCCCGGTGAAGAAAGACGCATCTACAAGTAAAAAAGAACctgttgtaataataaataaagaaattaatgaaataccAATTCcagtagaaaataatatatctcCTGTTATAAGAACAGAACCTATAAATTTCTTACCAGGGACCAGAATAGAAGCTaatgattttaatgaaaagtggAATCCTGCAACTATTTTAGAAGTAGATTATGATGAAAACGAAGTATTTGTTGAATttgagaaacatttaaataaagcaAACGAGTGGATACCGATGGATAGTTCTAGATTACGACCATATCATCCGCCACCCACTAATATTGAAACATATGCTGTAGGAGAAAGAGTTCTTGCAGCTTGGATAAAAACAGTTAATAAATTTCCAGCTACGATTAAAAAAGTTATAGATTCTGAAACATATGAAGTCTTATTTGATGAtggatatttaaaaattatgaaatattccaaacttgcaaaaattaaagatgtgtCAGCTAGTCGGGGTCGTCTAAAACATTCATCGCCGTTATTTGATCCTGTAGTTGGCTCGAAAGAAGACAGGAGAGAAAGaaaacgaaaattaaatgttgCAGAATTGTTTGGTAAAGTTCCTATTgAAGATGATGTACAATCTCAAGAAGAATTTAGAAGTACAGGTTCATCTAGTCAAAATGAAGGTGAAGAATGGACGTGTCGCTGGTTAAACGGTGAACCAGTAGGAATTGAATCTGAACTAGAGGGACTAGATGGCCCAAGACGTTCAATTGTAGTCGCAGATCATCGTTTACCTCCAGGCTGGGAGAAACATTTAACTCAAAGGTTACATGGAAATAACGCAGGAAAATGGGACGCATTTATAATAGGTCCCAGCGGAAAAAGATTCTCTACTCGCGGACAAGTCAAGACATGGTTAGAAGATAATAAATTGGATTATAATGTAGAGAGATTTGATTTTTGTCTTCATTTAAATCGAGCCAAAAAATTAGGTTTATATGAAATTACTGATCCTGAGGCATTGGCTGCAGCAAAAGCTGCTCATCCTAAAGAACCATTCAAATATCACAAAAAATCATCAAAATCTCATGCTAATAAAATTTCAACTCCAAAAAGTGGTAGTAGTGTTAATTTACCTGTAACTCCAGAAATTCATGACCGTTTCCCTGAAGAGGAAGAGGAAGACACTTcacattatttgaaaattattcacGAAGATGGTAGTTATAAGTGTCCAATAGAAGGTTGCGGAAAGATTTTCCGAAAAGAAAACCTAGCACAGATGCATGTTAAACATTACCACCCAGAATCTGCTAAACTTTTAGGCTCCACTCCAAATGTTGCTGATTTAGCATATGCTAGAACAGTTGGAGAACATATTGATGATATAGTACCAAAAGCAAGAGGTGTTGGTTCTCCtcatgaaaaagaaaaaaatattagatctGAATCAACTCCAAAACCAAAATCTACTCTAAGAATTTTGCAACCCAAACTTCAATCAAAAATAGAGGAGGGGGAAATGAGAAAATCCCTTACGTCCCCACCCCTTCATCTATCAAAACATACCAAAGATTCAGAAATTATTAGATTACTGAACAGCGAACCAAAAACCAAAGGCATTGATTCTATTTTCGAAACAGTTCCTTCGAAAGCTCATGAGCATGTACCGATAAAAGAAGAACCTATTGAAAAATATCCAGACATCAAACTTAAAGATCTTTTGCATAAAGCAGAACCAATACCTCTATTTAAGAAAGAAGAACACCGATCAACCGGAATCAAAACTCTTCTTCCTGTAATAAGACATAATTTAGACGAAATTAAACAAGAAATGGAGGAACCTGAACCTGGTTTTCATGCACTTCCAAAAGCAGTTGAAAGGTTAAAACCAAGAAAGCGTCAATCTTCAGATAACAGTGAAGTAAAGAGAAGAAGATCTTTCAGATATGAGGACGAATTATCAGATTTCTACGAAGGGGATAGTCATTCTCAAGACTCCTTCAAGGAGAAGAAAGTTTTTGAAATGCAGCCCATTGCTCCAGTTGCCGAATCTCCGCAAGTTATTATTGAGGGAGGCGAAGTTATTCGTTTAGTACATATGAGGAGtgaagaaataataaattgtacatGTGGTATAACAGAAGAAGACGGTCTTATGATTCAGTGTGAGTTATGTTTATGCTGGCAACACGCTCAttgtaataatattcaaaaagaaaatgaagtacccgaaaaatatatttgttatatatgtaaaaatccTCCGAGAATGCGtgtttctaaaaaatatatacatgacCAAGATTGGTTAAAACAAGGAGTGCTCCCAACGGCAAATTATCATACGAAAGATGAAGAAGCTCTAAAAgagaaatttgaaaaattacgaaaatccCACGAACTTAGCGGATGTATAGttgaattaaatgaatatatacaCAATCTTAGAATTAAACTTAATATTGCAGAtaacAAAGATCACCCTAAACTTTATTTGTGGAGTAAAGCATGGAACAAGCCAGTTCCCAATGAAAACTTAAATGcaatgttaaattcaaaaacAGATCATAAACTAGATATTAAAgaggaaaatttgaattcaagcTTTTCCGGTTCGGATCATAGTTATATAAAAAGCAGCACATTCGGCGATGTTGCCCTTAAAAGTATGTTAGAACCACCAGTTGAAGAGATAAATCACGAAGACAcccaaaaaattaattctcAATCAGAACTGATTTCTATTCTTGAAGAAGGAACCAATCTTAAAACAGACATAAAAACAGAACCACCAGAATTCCCAAAAATTGATCTGAATACAATGATCGCTAATAATCTGGGTGATAAAACCGAATCAAAAGATGAAAATCTTCCAGAAGTTAATAAAGAAAATGCCTTAAGCGGAATTTTGAGTACTGGTTCTTTAGAGTTGGCGTTATCTCAAACTGATTTAGTTACTTCGTTCGCTCAGTTAAATGAAGTTGAAGCAACTACGACAGTTCCTCCTGTTCATATCCCTCAACCCGAAGCTGTTATAGATCCATCGGACTGTCGAATGAATCTAATTGAACACGTTTCTCATTTCCAAAGTTTGGTGGACGAAAGATTGAATTGCATTGAGGCGGAAATAAGTGAATTGGAGGACCAAGATTCAGATGATGATGAGGACGCATATCCAAAAATGAAACAGTCGTTACAAATGTTGATAAAAGATCTTGCAGCAATGCGGCACATAGCTGCTTTgagcaattaa
- Protein Sequence
- MGRKCNVLDCPSDSNRIEDNGVTFHKMPFHPDLRPKWIELCRIPKERQTNKVIYVCSRHFRRTDFCNFKGTKYMLRQGALPSVFPWTKSIIIPPQTSKTTLPLEEESNSIEIKTEEPEDEKSNNEELGEVEVKIEIPEEPEEEKEIPSEKPKIKKDISPPVKKDASTSKKEPVVIINKEINEIPIPVENNISPVIRTEPINFLPGTRIEANDFNEKWNPATILEVDYDENEVFVEFEKHLNKANEWIPMDSSRLRPYHPPPTNIETYAVGERVLAAWIKTVNKFPATIKKVIDSETYEVLFDDGYLKIMKYSKLAKIKDVSASRGRLKHSSPLFDPVVGSKEDRRERKRKLNVAELFGKVPIEDDVQSQEEFRSTGSSSQNEGEEWTCRWLNGEPVGIESELEGLDGPRRSIVVADHRLPPGWEKHLTQRLHGNNAGKWDAFIIGPSGKRFSTRGQVKTWLEDNKLDYNVERFDFCLHLNRAKKLGLYEITDPEALAAAKAAHPKEPFKYHKKSSKSHANKISTPKSGSSVNLPVTPEIHDRFPEEEEEDTSHYLKIIHEDGSYKCPIEGCGKIFRKENLAQMHVKHYHPESAKLLGSTPNVADLAYARTVGEHIDDIVPKARGVGSPHEKEKNIRSESTPKPKSTLRILQPKLQSKIEEGEMRKSLTSPPLHLSKHTKDSEIIRLLNSEPKTKGIDSIFETVPSKAHEHVPIKEEPIEKYPDIKLKDLLHKAEPIPLFKKEEHRSTGIKTLLPVIRHNLDEIKQEMEEPEPGFHALPKAVERLKPRKRQSSDNSEVKRRRSFRYEDELSDFYEGDSHSQDSFKEKKVFEMQPIAPVAESPQVIIEGGEVIRLVHMRSEEIINCTCGITEEDGLMIQCELCLCWQHAHCNNIQKENEVPEKYICYICKNPPRMRVSKKYIHDQDWLKQGVLPTANYHTKDEEALKEKFEKLRKSHELSGCIVELNEYIHNLRIKLNIADNKDHPKLYLWSKAWNKPVPNENLNAMLNSKTDHKLDIKEENLNSSFSGSDHSYIKSSTFGDVALKSMLEPPVEEINHEDTQKINSQSELISILEEGTNLKTDIKTEPPEFPKIDLNTMIANNLGDKTESKDENLPEVNKENALSGILSTGSLELALSQTDLVTSFAQLNEVEATTTVPPVHIPQPEAVIDPSDCRMNLIEHVSHFQSLVDERLNCIEAEISELEDQDSDDDEDAYPKMKQSLQMLIKDLAAMRHIAALSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00768532;
- 90% Identity
- iTF_01104538;
- 80% Identity
- iTF_00768532;