Hrub076999.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720464.1:2694354-2698033[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0048 44 6.6 0.0 26 48 112 134 100 138 0.81 2 7 0.00067 6.1 9.3 1.2 25 45 144 163 135 170 0.84 3 7 2.5 2.3e+04 -2.1 0.0 27 45 173 191 171 199 0.84 4 7 0.21 2e+03 1.3 0.0 26 46 201 221 193 226 0.86 5 7 0.00012 1.1 11.7 0.2 26 45 247 266 237 270 0.88 6 7 0.00017 1.6 11.2 1.0 24 47 278 300 270 306 0.86 7 7 0.55 5.1e+03 -0.0 0.0 26 46 307 327 302 332 0.88
Sequence Information
- Coding Sequence
- ATGGAAACGCAGTGCTGCTGGGTCAACACAACAGCGGAAAATGCTTCCAACACTCAGCTGCACATTATGCCGGACGAGAGTGCGTCATTACGAACAAACCATGACATTTTGAAAAGTGTTCCTGTTAAAGAAAGTTCTCTTAGAAAAAAGTCCAGTAATCGTGAGTTCAACTACAACGATGACACACTATTCCAAACTgtaaaagatATCAACGAAGAACCGATGAGTATTGatgataaaatttcaattaaagaTGAATCCCTACAAGAAAACGAAAGTTTAAAcgataataacataaataatagtAAAGATAATCAAGTAACAACCGGCTATAACTGTCCTATTTGCCAAGAATTTTTTGCAGAAAGTGAAAACCTGTTAATACATATGAAAAACAGTCATACAAGAATTCTGTCAAACGGACTAAGAGCTGAGTGTCCTATTTGCAATAAGATTCTACTTGTTTGTAATCTCAGAAGACACTTAAAATATCATGTTGGAATAAAAGATTTCCGTTGTACTATCTGCAATAATTCATTTACAGAAAAGAGCAATTTGATATATCACATGGGAATTCATAGTGGAAGAAAAAAAGAATTTCAATGTTTAATATGTAAGAAAAGATTTATGAAGGATAAGaatttaagtaaacatatgaaaatccatagtaagaaaaaaataaataaaaaaaataatattgtgaaGGAAGAGAGAAAAGAAGAAATACCTGTGAATTACGAGTGTCCAGTATGCCACCAAATATTTGCAGAGAGTAAAAACCTTATCAGACATATTAAAAATCATATTGGTACTGGAATCAAGCCTGACAAAAAGTCACAGTGTcctttttgtaataaatttgtaCGACATTGTAATCTGAGAAGACATCTAAAACTTCATGTTGGAATTAGGGAATTTCAGTGTtctatatgtaataaatattttacacagaAAGAAAGCCTGAAGTATCATATGACAGTCCATACtggtgtaaaaataaaaaaattcgagTGCGATATCTGTCAtaaaaaattttcaagaatatGCATCCTGAAAACTCATTTGTTAAGTCATAGTGACTTTAGTGCACAAAACATAGACGATGGACGTACAGCGCAAGGACAAGAACAAAATGATGGACAATTTTGTATTAAAGACAAACAGATGGAAGAATATTCTACAGTGTCTACaggttacttatttacttacttaatccAAAGACTTTATACCTTTCGGTATCACGCGTGTTGA
- Protein Sequence
- METQCCWVNTTAENASNTQLHIMPDESASLRTNHDILKSVPVKESSLRKKSSNREFNYNDDTLFQTVKDINEEPMSIDDKISIKDESLQENESLNDNNINNSKDNQVTTGYNCPICQEFFAESENLLIHMKNSHTRILSNGLRAECPICNKILLVCNLRRHLKYHVGIKDFRCTICNNSFTEKSNLIYHMGIHSGRKKEFQCLICKKRFMKDKNLSKHMKIHSKKKINKKNNIVKEERKEEIPVNYECPVCHQIFAESKNLIRHIKNHIGTGIKPDKKSQCPFCNKFVRHCNLRRHLKLHVGIREFQCSICNKYFTQKESLKYHMTVHTGVKIKKFECDICHKKFSRICILKTHLLSHSDFSAQNIDDGRTAQGQEQNDGQFCIKDKQMEEYSTVSTGYLFTYLIQRLYTFRYHAC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767548;
- 90% Identity
- iTF_00767548;
- 80% Identity
- iTF_00767548;