Hrub084576.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720466.1:17971927-17972682[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00039 3.6 10.1 0.1 26 46 123 143 114 149 0.89 2 4 6.2e-06 0.057 15.8 0.1 26 47 151 172 147 177 0.86 3 4 0.068 6.3e+02 2.9 0.0 21 46 174 199 171 205 0.82 4 4 0.026 2.4e+02 4.2 0.0 27 46 208 227 202 232 0.89
Sequence Information
- Coding Sequence
- ATGGAGGATGCCAGTACAGGACCAGTTGCAgataacctcaaatttgaagAAGTCTTCATAAAGGAAGAACCAGTGGACGATAATCCCGATGATCCGCAAATTGAAGATAATTTAATGCATAATACAGTGAAACACGAAAGCACATTCGACAATAATTGTAATGACGATATAGGTTACGTAAACATAGTACCAGTCAATAATGTCATAACCTGTAATACCGGTAACCAAATTAACATAGTCATGGTCAACAATATTTCAACACCTTTTAATTCTTCTAAATACTGTTGTTCGGTCTGTCATAAAGGGTTTGCATTAAAATCTTATTTATCGGTACATATGAAAAGACACACTGAAACAAAACTGCTTAATTGTTCGTTATGTGAAAAAACGTTTAGAGACAAACGAAACTTAAAAAAACACCTGAAAGTGCATTCTGGTGTAAGAGATTACCAATGCCCTATTTGTTATAAGATGTACACTCAAAACCATAAcctaaaaatacatttaaaaaccCATAGTGGAGAGAAACCTTTTAAGTGTTCTATCTGCGGCAAAtcatttatacaaaaatgtaGTTTAGAGTTACATATGAAAGTCCATTATGGAATCAAAGATTTCGAGTGTGAAATAtgtcacaaaaaatttatacagCCAAGTAATCTCAAACAACATATGAGTGTTCATATTTCTCCTAAAAAGAAAAAGTTCAGTTGCACTAACTGTGATAAAAAATTTGCTCTGAAAGGAACATTATAA
- Protein Sequence
- MEDASTGPVADNLKFEEVFIKEEPVDDNPDDPQIEDNLMHNTVKHESTFDNNCNDDIGYVNIVPVNNVITCNTGNQINIVMVNNISTPFNSSKYCCSVCHKGFALKSYLSVHMKRHTETKLLNCSLCEKTFRDKRNLKKHLKVHSGVRDYQCPICYKMYTQNHNLKIHLKTHSGEKPFKCSICGKSFIQKCSLELHMKVHYGIKDFECEICHKKFIQPSNLKQHMSVHISPKKKKFSCTNCDKKFALKGTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767520; iTF_00767775; iTF_00767523;
- 90% Identity
- iTF_00767520;
- 80% Identity
- iTF_00767520;