Hrub025003.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720452.1:14745655-14747361[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 3.9 3.6e+04 -2.8 0.0 27 40 53 66 50 68 0.83 2 7 0.52 4.8e+03 0.1 0.1 26 44 203 221 197 224 0.88 3 7 0.0016 14 8.1 0.2 19 45 223 249 215 257 0.87 4 7 0.002 18 7.8 0.3 16 52 278 314 268 316 0.86 5 7 1.3e-05 0.12 14.8 0.0 21 44 352 375 335 382 0.88 6 7 0.0044 40 6.7 0.0 26 52 385 411 380 413 0.93 7 7 0.01 95 5.5 0.3 23 49 410 436 406 440 0.79
Sequence Information
- Coding Sequence
- ATGAATCTAAAATCAGATATGTGTCGAGTATGTATGATGACTAGTGAATATTTAAAAGACGTTATCAGCTTTGAATTAACTCCAGATATAATCAGCATGCTTAGTTCATTTGCCAATATTGATGTCTCGACAGACGAATGTCTTCCTTCTCTTATATGCAATAAATGTTATACCTCTTTAATGGactcatttaattttaaaaatttatgtatacaATCTAATAATACCTACAAAgattatatatcaaaattacaaaacaaGCGTATAGATACGCCTCAGGGAAACAAAGAGATACCTCCACCAAAAAGTGCGTCACCAGCACCACTagcagaaaatataaaaatagaactCAAAAGAAAAGATAGTGAgtctgaaaatatttttgaaaacatttcacATAATATGGAATATATTGCCGTTAAAAGTATAGCAGAAATGATTGACGAACCTGCACCAGAATTATTAAACGCACTTGGTTTGATAAAAGTATCAGAAGTTGATAACATAACAAAAGGATCAAATTCTGATGAATCATTAAATAGCTCAACAAGTAGTATAAATAGTAACAATAAAGACtgcaaattaaataataagaaaaaatcgTATAAATGTAAAGTATGTCGCGATGTAATGTACGATTATGGAGTCTACAGGCGACATTTAGCGTCTCACGGCGAGCGTCCATACACTTGCAAAATCTGCGGAGAACATTTTAGTAAAGCACGTGCCTTAAAAGAACACTCTTCAAACACCCATTCAGGAGATCGACCATATTCTTGTACTCAATGCAGTTCAAAATTCGTTCGACTTAGCGATTTAACAACTCATCTTCGAAAACACGCTGGCAACGCTCAACCGCACACTTGTTCTTTGTGCCGCAAACGATTTACAACAGCCAAACAACTTCGCGAACATTCTTCAATCCATGAAAACAACAAACCATTTATGAGATATAAAAAATCTCCTACTGGTTGCGGAGAACATGTCTGTAAACAATGTGATCGCAGATTCcgcaaaaaatgtgatttagaACGGCACGAGCGCGTACATTCGGGGGAAAAGCCCTATACCTGTCCCTTATGCGATGGGAAATTCCAACAAGCTCATAATTTAACAAAACACATGGTTACACATACTGGAGTTAGATCCTACACTTGTGATATTTGCCAAAAGACATTTGGACGATCCGATGTATTAACCCGACATATGCATGTCCATGAAGTAAGTAAACCATTCAGTTGTGAGTTTTGCTATAGAACTTTTGTACGACAATCACAACTTACTAATCATGTAATGAAAAGGCATCCTAAAAAAGAAAACACAACGAAAATTTCTCCAAAAGAAAAGAATTTGAAAGTTGTAAATGGTTCCAAAATAGCAAAACATTCTAATGTTGTTAATGGCTCCAAAATAGCAAAACATTCTAATGTTGTTAACGGTTCTAAAATACAAAACGATtccaatattaataatatttctaaaataggAAGTATTTCCGCAAAAAATAATTCGAATGTGATTAATGGttcaatagtaaaaaaatctgcggcacaaactgcagaaaaaaaattccaaaaagaAATTGagctaaaaattaaatttgagtGA
- Protein Sequence
- MNLKSDMCRVCMMTSEYLKDVISFELTPDIISMLSSFANIDVSTDECLPSLICNKCYTSLMDSFNFKNLCIQSNNTYKDYISKLQNKRIDTPQGNKEIPPPKSASPAPLAENIKIELKRKDSESENIFENISHNMEYIAVKSIAEMIDEPAPELLNALGLIKVSEVDNITKGSNSDESLNSSTSSINSNNKDCKLNNKKKSYKCKVCRDVMYDYGVYRRHLASHGERPYTCKICGEHFSKARALKEHSSNTHSGDRPYSCTQCSSKFVRLSDLTTHLRKHAGNAQPHTCSLCRKRFTTAKQLREHSSIHENNKPFMRYKKSPTGCGEHVCKQCDRRFRKKCDLERHERVHSGEKPYTCPLCDGKFQQAHNLTKHMVTHTGVRSYTCDICQKTFGRSDVLTRHMHVHEVSKPFSCEFCYRTFVRQSQLTNHVMKRHPKKENTTKISPKEKNLKVVNGSKIAKHSNVVNGSKIAKHSNVVNGSKIQNDSNINNISKIGSISAKNNSNVINGSIVKKSAAQTAEKKFQKEIELKIKFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00769306;
- 90% Identity
- iTF_00769306;
- 80% Identity
- iTF_00767565;