Hrub084584.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720466.1:18053562-18054983[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0016 14 8.1 0.2 27 51 101 124 85 126 0.87 2 7 0.19 1.8e+03 1.5 0.1 24 44 129 148 124 158 0.69 3 7 0.29 2.7e+03 0.8 0.0 27 46 159 178 155 183 0.88 4 7 0.00015 1.4 11.4 0.2 20 45 215 240 201 248 0.85 5 7 0.0078 72 5.9 0.0 26 45 255 274 243 280 0.89 6 7 0.23 2.1e+03 1.2 0.0 26 45 311 330 307 337 0.88 7 7 0.00051 4.7 9.7 0.1 21 51 341 371 333 373 0.83
Sequence Information
- Coding Sequence
- atggacAGCAATATACACGGAAAAGCGAACGAGATTGCGCAGAGAAACACGGACAACATTGCGCATGCGTCATCTGATCCGGAAGGCAGAGACATCGCTGACAAAATGGACGCCGGCTCGTCGAGTTTCGGTGAAAAATCCGTAGAATCCAACAATATTGTGCAAGAAGAATCGGGCAATAAAAATTTcgaagaattttatattaaacaagaaaattttaCAGATTCTGAGAGTAGCGATGATGTACAAGCCACATCAAAAGTCGAAACTACAAGCGACGATAATATTACCAGGTTTGAGTGTTTAATATGTCCTGCATATTTTGCAGACAGTCAAAATTTGATACGACACATGCGGACTCATTTTGTTAAGTATGATGAAAAGAGACTGGAATGTCCAATTTGTAGCAGATTTACAGATCGTAccaatttaaacaaacatattAAAAAGCATATTGGTATCAAGGATTTTGATTGCCATTTATGTTACAAATCATTTACCGAAAAAGCTAATCTGgaatatcatataaaaatacatttagggCAAAAAGATTTCCAATGTTTAACTTGCAGTAAAACATTTTTGACGAATAAAAATTTGAATGATCATATCAAAACACACAATGAACAAAAGACTTCACACGAATCGAAAAAAGCCTATAAATGTCCAATTTGCGATAAAACCTTTACAAATTATAGCAACTTGAGAAGACACATTAGAACGCACGACAAAAGTTATAAAGATGTACCTAAAAAAACTtacaaatgtacaatttgcaaCAAAGTCTCTACTGATAGCAGTAATATGAAAAAACACATGAAAAAACATTCCGGAATCAAAGATTTCCATTGTAGTCTATGTGATAAGTATTTTACCGAAAAAGCCAGTTTGGATTATCATTTGAATTTACACAGTGGCCGACGTGACTTTAAATGTGAAATATGCAGCAAaacatttataacaaaaagaaaccTTAACATGCACATGCAGACACATAGCGAAGtaaaaaataagacaatatCCACAAAAACTTATCAATGTCCTGTTTGCAGTAAAGTCTCTGCAGACAATAGCAACATGAAGAGACATATCCAAACTCACAATAAAGCCAAAGAAAAACAAATACCAAAAAGGATTTATCAATGCCATTTCTGCGCAAAAACATCAACTGATTGTAGTAATATGAACAAACATATTAAAACACATACGAAGAGTCAGtcagataaaaataaaacccAATGCAGCACAAATGCGTCTGATACGAATGATAAATGTGCGGTACAAGAAGAGAGTTTTGTGAACTTTGAAGATGttttaataaaagaagaatCTCTGGAAGAAAACTCTAGTGatcgcaaattttataataacatagtGCAAACCATAATAAAAGACGATAAGACATTTGACGATCCACTATAA
- Protein Sequence
- MDSNIHGKANEIAQRNTDNIAHASSDPEGRDIADKMDAGSSSFGEKSVESNNIVQEESGNKNFEEFYIKQENFTDSESSDDVQATSKVETTSDDNITRFECLICPAYFADSQNLIRHMRTHFVKYDEKRLECPICSRFTDRTNLNKHIKKHIGIKDFDCHLCYKSFTEKANLEYHIKIHLGQKDFQCLTCSKTFLTNKNLNDHIKTHNEQKTSHESKKAYKCPICDKTFTNYSNLRRHIRTHDKSYKDVPKKTYKCTICNKVSTDSSNMKKHMKKHSGIKDFHCSLCDKYFTEKASLDYHLNLHSGRRDFKCEICSKTFITKRNLNMHMQTHSEVKNKTISTKTYQCPVCSKVSADNSNMKRHIQTHNKAKEKQIPKRIYQCHFCAKTSTDCSNMNKHIKTHTKSQSDKNKTQCSTNASDTNDKCAVQEESFVNFEDVLIKEESLEENSSDRKFYNNIVQTIIKDDKTFDDPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00767434;
- 90% Identity
- iTF_00767434;
- 80% Identity
- iTF_00767434;