Hrub073252.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- Lztr1
- Assembly
- GCA_963082715.1
- Location
- OY720463.1:8408568-8443308[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.4e-12 4.4e-09 38.8 0.0 5 80 255 348 251 386 0.78 2 4 0.09 1.2e+02 5.2 0.1 77 109 386 418 378 419 0.86 3 4 5.9e-21 7.5e-18 67.0 0.0 9 97 481 569 474 583 0.86 4 4 0.94 1.2e+03 2.0 0.1 76 101 582 607 577 615 0.77
Sequence Information
- Coding Sequence
- ATGTTTGTTTTCGGCGGTTATACCGGCGACATACACAGCAATTCTAACCTTACAAATAAGAACGATTTATTCGAATACAAGTTTCATTCTGGCCAATGGACAGAATGGAAATTTCTCGGCCGTACACCGGTTGCCAGATCAGCGCATGGGGCTGCAGTATTTGACAACAAACTCTGGATCTTCGCGGGGTACGACGGCAATGCTCGTCTCAATGATATGTGGACAATATCGCTCACTGGAGATACCCACAGTTGGCAGGAAGTTATACAGAAAGGTGAATGCCCACCGACCTGTTGTAATTTTCCTGTGGCAGTGGCCAGAGAATGTATGTTCGTTTTTTCTGGACAAAGCGGagcaaaaataacaaattctttATTCCAATTCAACTTTAAAGACAGATGCTGGTCCCGCATTAGCACCGAGCACATCCTCCGAGGTGCTCCGCCCCCGCCAGCCCGCCGCTACGGGCACACAATGGTGGCTCACGCGCGCCATCTGTACGTCTTTGGCGGGGCCGCAGATTCGACTCTGCCAAACGACTTGCATTGCTATGATTTAGACGCCCGAGCTTGGAGCGTTGTAACGCCTGCGGAAGACAGCCAAGTGCCCTCTGGGAGGCTCTTCCATGCGGCTGCTGTCGTTCAGGAAGCTATGTTTGTCTTCGGGGGTACCGTGGATAATAATGTTAGAAGCGGAGAGATGTTTAGATTTCAGttctCCAGTTATCCAAAATGCACTTTACACGATGATTACGGCCGAATATTAGAGTCCAAACAGCTTTGCGACGTGGAGTTCATTGTTGGCGAGGACGAGGTTCGAATCCCGGCCCACATGGCGCTAGTAGCCGCGCGGTCTCAGTGGTTAAAGAGCAGGATTCGACAGGCCAAAGAAATTCGGGATAAAATCTTGGAGAAATCGGAAAACAAGCAAGAAAAAGATGCGCCTTTAGTTGAGGTTAAACTGCTCGACGCCGTTCCAGAAGCGTTTCAAATGATACTTAGCTACATTTACACCGACAGAATCGACCCAACAAAATCTGGGAGCGAGGACCCATTCTGTAATCGGATAGTTTTGTTGATTATGGACGTGTACCGATTAGCAGTGCAGTGTTCTATGAAAAGATTAGAATCTTTGTGTGTTGGTTACTTAGAAGCTGCGATCAGTTTGAGAAATGTACTGCAGGCACTGCACAATGCAAGTAAATTGAGGCTGGATTTCATTCAAGAGTTTTGCTTGAAGTTTATTGTCAAAGATTCCAATTACAATCAAATTGTGATGTCCAAAGAATTTGAGACATTGGATAGACAATTAATGGTTGATATTATACGAAGAAGACAACAACCTTCACATCATCGTTCAGAACTTCAGTTATCTAGTTCTTTGTCCACTGGAACGAGTCTTGAACAAGATTTAGCAGCATTTCTAAAAGGCGCGGGGAGAGAGTTTTGCGACATTACCCTGGTTTTAGGGAACCATTCCGTACCCGCGCATAAATGCGTTCTAGCCGCAAGGTGTGGCTACTTCGAAGCGATGTTCCGAAGTTTTATGCCCGCTGACAATACCGTCCGAATACAAATTGGAGAAATGACGCCGAGCAAAGAAAGTTTTGACTCTTTATTGAGGTATATATACTACGGCGATGTCTCCATGCCTCCTGAAGACTCTTTATATCTTTTCAGCGCCCCATATTTTTACGGCTTTACAAACAATCGCTTACAGGCGTTTTGTAAGCAAAATCTAGAGATGAACGTCACGTTTGAGAATGTGATACAGATTTTAGAAGCCGCAGATAAGATGCAAGCCATCGATATGAAAAAATATGCCCTGAATATGATCGTTCATCATTTTTCAAAAGTCGCTCGTCTCCCCAAAATGAGAACACTATCTAGGGAGTTAATTTTGGATGTGTTGGAAGCCTTGGCTGAAGATATGTCCGAGTCGAAACTATGCCAAGATTTGTCAAGCGTTTCTCTAAGTTCCGACTGA
- Protein Sequence
- MFVFGGYTGDIHSNSNLTNKNDLFEYKFHSGQWTEWKFLGRTPVARSAHGAAVFDNKLWIFAGYDGNARLNDMWTISLTGDTHSWQEVIQKGECPPTCCNFPVAVARECMFVFSGQSGAKITNSLFQFNFKDRCWSRISTEHILRGAPPPPARRYGHTMVAHARHLYVFGGAADSTLPNDLHCYDLDARAWSVVTPAEDSQVPSGRLFHAAAVVQEAMFVFGGTVDNNVRSGEMFRFQFSSYPKCTLHDDYGRILESKQLCDVEFIVGEDEVRIPAHMALVAARSQWLKSRIRQAKEIRDKILEKSENKQEKDAPLVEVKLLDAVPEAFQMILSYIYTDRIDPTKSGSEDPFCNRIVLLIMDVYRLAVQCSMKRLESLCVGYLEAAISLRNVLQALHNASKLRLDFIQEFCLKFIVKDSNYNQIVMSKEFETLDRQLMVDIIRRRQQPSHHRSELQLSSSLSTGTSLEQDLAAFLKGAGREFCDITLVLGNHSVPAHKCVLAARCGYFEAMFRSFMPADNTVRIQIGEMTPSKESFDSLLRYIYYGDVSMPPEDSLYLFSAPYFYGFTNNRLQAFCKQNLEMNVTFENVIQILEAADKMQAIDMKKYALNMIVHHFSKVARLPKMRTLSRELILDVLEALAEDMSESKLCQDLSSVSLSSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00768880;
- 90% Identity
- iTF_00768880;
- 80% Identity
- -