Hrub065091.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- TIGD6
- Assembly
- GCA_963082715.1
- Location
- OY720461.1:8513594-8515408[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-09 1.5e-06 30.1 0.0 6 37 19 50 14 56 0.88
Sequence Information
- Coding Sequence
- ATGCCAAgaagtaaattaaacaaaaaaaggATTAAACCAgatgaaaaaaatgttactgCTGCAGCCCGCttagttttagaaaataatttcagcGTTCGGCAAGCTGCTGACCACTATGGAATATCAAAATCTACTCTTTCAAGACATATTCTTAAGCATAAAGCAAGCGGAGGCGAAGAATTTATTTACAGTGCGGCTCAGGAtgttaaaaaagttttaacaGAAACGCAAGAAAATGAATTAGTTGCATATTTGTTAGAATGTGCTAATATGCACTATGGTTTATCAACCCACGAAGTAAGAAAACTAGCATTTAACTATGCTGTGGCTAATAACATGAAATATCCTGTTTCTTGGGATACAAATAAAAAAGCGGGCAAAGAATGGTTTAGGTATTTCTTACGAAGACATCCACGAATATCATTAAGAAAACCACAAGCAACTAGTTTGGCAAGAGCAACTTCATTTAATAGAACCAacgtaaatacattttttgataaacTTGAAGATGTTATGCAACGCTATCACTTTTCTCCGgaaaatatttacaatgttGACGAAACGGGTATGTCAACTGTACATACTCCAGTTAGAGTTATTACAGCAAAAGGGTCTAAACAAGTTGGTAGCATGACGTCAGCTGAGCGTGGTATAAATGTTACTCTTATAGCAAGTATTAACGCAATTGGCAATTCAATACCGCCTATGTTTGTTTTTCCGCGAGTATATTTCAAAGATCACATGCTGAACGGTGCCCCTGTAGGAAGCATAGGAAGTGCAAATCCAAGTGGGTGGTCAAATAGTtcaatatttattgaatatCTACATCACTTTATTAAACACGCTCATTCTACCACTGAAAATAGAGTGCTGTTGATTATGGACAACCATGAGAGTCACATCTCAATTGAGGCTCTAGACTTAGCCAAAACTGCAGGAATAACGATGTTAACTTTCCCTCCGCATACAAGCCACAAATTGCAGCCACTTGATAGAACTGTATTTGggcctttaaaaaaatattttaatactgcGTGTAATGAATGGCTACTGGTTCATTGTGGCACGCCAATGTCAATTTATCATGTGGCTGAATGTGTTGGGAAGGCTTATCCACTGGCGTTTACACCTAAAAACGTCCAATCAGGATTTTCTGTTACAGGAATATATCCTATTGACAGGAATGTTTTCAAAGATGATGAATATTTGAGCTCTTTTGTGACAGATAGATTAATTCCACAGACCCCATCTAATTCGGAAGAGCAGCCTCAACCTGGACCATCAAGGGAACATCACACACCAGAGCAAGTACGACCATTTCCAAAGGCTCAACCAAGGAAGGAAGGTAAAAGAGGGGGTAGGAAACCAGGAAGATGCCGAATTGTTACTGACACTCCAGAAAAAAATGAACTTGAAATGCAGgcacaaatgaaaaataagacaaagAAGAAAGAATTAGCTATTAAGAAAAAGAAggttaagaaaattttaaaatacagcAGTTCTGAGAGTAGTTCAGAAGACGAATTGCTGGAAGATACAGATGATTCTCTAGAAGACATTGAATTTGGAGAAGCAGAGATAGAAACAAATAATGAGATCGAACAACTTAAGATTGGCGACTATATTTTAGCAAAATTAGAAaccaaaagaataagaaaatattacgtTGCTATAATCACAAACATTGATGACGATacatttaatgtaaaatattataaaaaaaataaatatagagtaCGAATTGCCAAAGAGCGATGTCATAATTACACTTGGCAAACCACAAGTAGTTGCAGGTACTGCGAGACAAAATGA
- Protein Sequence
- MPRSKLNKKRIKPDEKNVTAAARLVLENNFSVRQAADHYGISKSTLSRHILKHKASGGEEFIYSAAQDVKKVLTETQENELVAYLLECANMHYGLSTHEVRKLAFNYAVANNMKYPVSWDTNKKAGKEWFRYFLRRHPRISLRKPQATSLARATSFNRTNVNTFFDKLEDVMQRYHFSPENIYNVDETGMSTVHTPVRVITAKGSKQVGSMTSAERGINVTLIASINAIGNSIPPMFVFPRVYFKDHMLNGAPVGSIGSANPSGWSNSSIFIEYLHHFIKHAHSTTENRVLLIMDNHESHISIEALDLAKTAGITMLTFPPHTSHKLQPLDRTVFGPLKKYFNTACNEWLLVHCGTPMSIYHVAECVGKAYPLAFTPKNVQSGFSVTGIYPIDRNVFKDDEYLSSFVTDRLIPQTPSNSEEQPQPGPSREHHTPEQVRPFPKAQPRKEGKRGGRKPGRCRIVTDTPEKNELEMQAQMKNKTKKKELAIKKKKVKKILKYSSSESSSEDELLEDTDDSLEDIEFGEAEIETNNEIEQLKIGDYILAKLETKRIRKYYVAIITNIDDDTFNVKYYKKNKYRVRIAKERCHNYTWQTTSSCRYCETK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00988020;
- 90% Identity
- iTF_00766357;
- 80% Identity
- -