Hrub077414.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- TIGD6
- Assembly
- GCA_963082715.1
- Location
- OY720464.1:6552020-6553909[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-10 1.4e-07 33.4 0.0 2 37 15 50 14 56 0.91
Sequence Information
- Coding Sequence
- ATGCCAAgaagtaaattaaacaaaaaaaggATTAAACCAGATGAAAAAAATTTTACTGCTGCAGCCCGCttagttttagaaaataatttcagcGTTCGGCAAGCTGCTGACCACTATGGAATATCAAAATCTACTCTTTCAAGACATATTCTTAAGCATAAAGCAAGCGGAGGCGAAGAATTTATTTACAGTGCGGCTCAGGAtgttaaaaaagttttaacaGAAACGCAAGAAAATGAATTAGTTGCATATTTGTTAGAATGTGCTAATATGCACTATGGTTTATCAACCCACGAAGTAAGAAAACTAGCATTTAACTATGCTGTGGCTAATAACATGAAATATCCTGTTTCTTGGGATACAAATAAAAAAGCGGGCAAAGAATGGTTTAGGTATTTCTTACGAAGACATCCACGAATATCATTAAGAAAACCACAAGCAACTAGTTTGGCAAGAGCAACTTCATTTAATAGAACCAacgtaaatacattttttgataaacTTGAAGATGTTATGCAACGCTATCACTTTTCTCCGgaaaatatttacaatgttGACGAAACGGGTATGTCAACTGTACATACTCCAGTTAGAGTTATTACAGCAAAAGGGTCTAAACAAGTTGGTAGCATGACGTCAGCTGAGCGTGGTATAAATGTTACTCTTATAGCAAGTATTAACGCAATTGGCAATTCAATACCGCCTATGTTTGTTTTTCCGCGAGTATATTTCAAAGATCACATGCTGAACGGTGCCCCTGTAGGAAGCATAGGAAGTGCAAATCCAAGTGGGTGGTCAAATAGTtcaatatttattgaatatCTACATCACTTTATTAAACACGCTCATTCTACCACTGAAAATAGAGTGCTGTTGATTATGGACAACCATGAGAGTCACATCTCAATTGAGGCTCTAGACTTAGCCAAAACTGCAGGAATAACGATGTTAACTTTCCCTCCGCATACAAGCCACAAATTGCAGCCACTTGATAGAACTGTATTTGggcctttaaaaaaatattttaatactgcGTGTAATGAATGGCTACTGGTTCATTGTGGCACGCCAATGTCAATTTATCATGTGGCTGAATGTGTTGGGAAGGCTTATCCACTGGCGTTTACACCTAAAAACGTCCAATCAGGATTTTCTGTTACAGGAATATATCCTATTGACAGGAATGTTTTCAAAGATGATGAATATTTGAGCTCTTTTGTGACAGATAGATTAATTCCACAGACCCCATCTAATTCGGAAGAGCAGTCTCAACCTGGACCATCAAGGGAACATCACACACCAGAGCAAGTACGACCATTTCCAAAGGCTCAACCAAGGAAGGAAGGTAAAAGAGGGGGTAGGAAACCAGGAAGATGCCGAATTGTTACTGACACTCCAGAAAAAAATGAACTTGAAATGCAGgcacaaatgaaaaataagacaaagAAGAAAGAATTAGCTATTAAGAAAAAGAAggttaagaaaattttaaaatacagcAGTTCTGAGAGTAGTTCAGAAGACGAATTGCTGGAAGATACAGATGATTCTCTAGAAGACATTGAATTTGGAGAAGCAGAGATAGAAACAAATAATGAGATCGAACAACTTAAGATTGGCGACTATATTTTAGCAAAATTAGAAaccaaaagaataagaaaatattacgtTGCTATAATCACAAACATTGATGAAGATacatttaatgtaaaatattataaaaaaaataaattaacacaaaaatttGCGATTGGCGACAATATAGAGTACGAATTGCCAAAGAGCGATGTCATAATTACACTTGGCAAACCACAAGTAGTTGCAGGTACTGCGAGACAAAATGAGGAGCTTAAATTTGAAATAGACGTATCAGCTTATAATGTAGAATAG
- Protein Sequence
- MPRSKLNKKRIKPDEKNFTAAARLVLENNFSVRQAADHYGISKSTLSRHILKHKASGGEEFIYSAAQDVKKVLTETQENELVAYLLECANMHYGLSTHEVRKLAFNYAVANNMKYPVSWDTNKKAGKEWFRYFLRRHPRISLRKPQATSLARATSFNRTNVNTFFDKLEDVMQRYHFSPENIYNVDETGMSTVHTPVRVITAKGSKQVGSMTSAERGINVTLIASINAIGNSIPPMFVFPRVYFKDHMLNGAPVGSIGSANPSGWSNSSIFIEYLHHFIKHAHSTTENRVLLIMDNHESHISIEALDLAKTAGITMLTFPPHTSHKLQPLDRTVFGPLKKYFNTACNEWLLVHCGTPMSIYHVAECVGKAYPLAFTPKNVQSGFSVTGIYPIDRNVFKDDEYLSSFVTDRLIPQTPSNSEEQSQPGPSREHHTPEQVRPFPKAQPRKEGKRGGRKPGRCRIVTDTPEKNELEMQAQMKNKTKKKELAIKKKKVKKILKYSSSESSSEDELLEDTDDSLEDIEFGEAEIETNNEIEQLKIGDYILAKLETKRIRKYYVAIITNIDEDTFNVKYYKKNKLTQKFAIGDNIEYELPKSDVIITLGKPQVVAGTARQNEELKFEIDVSAYNVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00988020;
- 90% Identity
- iTF_00988033; iTF_00766384; iTF_00988028; iTF_00987970; iTF_00988031;
- 80% Identity
- -