Basic Information

Gene Symbol
nfxl1
Assembly
GCA_030770355.1
Location
JASTWR010000216.1:225103-228147[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.1 2.6e+04 -3.2 1.1 15 19 126 130 125 130 0.81
2 18 0.42 1e+04 -1.9 0.6 4 10 161 167 161 167 0.93
3 18 5.6e-08 0.0014 20.0 15.1 1 18 175 191 175 192 0.98
4 18 9.7e-07 0.023 16.1 10.9 4 18 231 245 229 246 0.94
5 18 1.5 3.7e+04 -3.7 1.7 6 10 271 275 271 275 0.93
6 18 1.5e-05 0.36 12.3 12.3 1 19 281 300 281 300 0.93
7 18 0.00014 3.4 9.2 8.3 1 18 336 353 336 354 0.97
8 18 0.0069 1.7e+02 3.8 7.6 1 12 388 399 388 399 0.94
9 18 1.2 2.8e+04 -3.4 1.4 6 10 409 413 408 413 0.88
10 18 4.2e-07 0.01 17.2 13.6 1 19 419 437 419 437 0.91
11 18 7.5e-05 1.8 10.0 8.6 9 19 485 495 483 495 0.90
12 18 0.0018 45 5.6 7.4 1 12 505 515 505 515 0.95
13 18 0.86 2.1e+04 -2.9 5.8 14 18 547 551 547 552 0.89
14 18 0.0019 45 5.6 8.2 1 12 588 599 578 599 0.80
15 18 2 4.8e+04 -5.6 3.5 15 18 613 616 612 620 0.53
16 18 0.00019 4.7 8.7 17.9 3 19 629 645 628 645 0.92
17 18 0.0025 60 5.2 14.8 1 16 690 704 690 710 0.93
18 18 1.4 3.4e+04 -3.6 0.6 6 10 740 744 739 744 0.86

Sequence Information

Coding Sequence
ATGCAGAAATTTAAAAGAGCTCAAGCACAGAATAAACTGTCTATCGAAAGGCACTTGGAAGCCAACGCGTCGTTGAATTCTTCCAGCGAGGAAGAGGATGAAGCAAATGAGGAGGATGTCCAAAATGTGGTGGGCAAAGTATTGTCGGCGTACCAGGGGCAGAGCACGGATGCGGAGAAAGTGATAACCTACCTGGTTAATTCCTTTCAGACCAGCAGCGCTGTTTGTTTGATATGTATATCAACTGTCAAGAAAACAGATCCAATATGGAACTGCGACAAATGCTATGCATTTTTACACATATCCTGCATTCTACACTGGATCAACGACAGTTTGAGCTACAAACGGGCCAAAGGGATTACCCCGATTTGGGCATGTCCAAAATGCCGTATGGAATACGATCAGGACCAGATTCCAAGATCGTACAAATGCTTCTGTAAGAAGACTGTGGATCCTCTGCACCAACCCTGGGTTATTCCACATTCCTGCGGTGAAGCATGCGGCAAACTTCTGCAACCAGAATGCGGTCACAAGTGCGTGTTGCTCTGCCATCCTGGTCCGTGTCCACCCTGTGCCAAGATGGTGTCGGTTAAATGTTACTGCGGCAAACTACCGGCACAACCGCGACGTTGTAATGCTAAAAACTGGAGCTGCGGAACTGTGTGCAACCAAAAATATGAATCTTGTGTACACAGTTGCAATAGCCTGTGTCACACTGGAGAATGTTCCCCTTGTGTAGAAATAGTATTGCTGAAATGCCGTTGTAAGAGTAACGAGAAGACAGGGAAGTGCTACGAGGGCACGTGGATTTGTGAGAAACCTTGTAACAGGAGATTTTCTTGTAACGTACATAGCTGCGAGAGCACTTGCCATCTACCCGGCGACTGCGGCAACTGTCCCCTTGAAAAGAACAGATGCTGTCCTTGCGGAAAGAAACGATACGAAGTCTCTTGCAGGCGGCAGCAAGTGCCAACGTGCGGTGATACGTGCGGCAAGTTGTTGGACTGCGGGTCGCACTTCTGCAACATGAGATGCCATACCGATCGCTGCGGTCAGTGCTTGGAAGTCGTAATGAAAGCGTGCAGATGCGGCAGTTACATGAAAGAGATCGCCTGCGCGAAGGAGTTCCACTGCAACAAGAAATGCATGCAAATGCGCTTATGTGGTAGACATTTGTGCAACAAGAAATGCTGCGACTGCATAACGAAGAACACGTCCAATCCATGTGAGAAAACGTGCGAGAACACGCTCAACTGCCGTAAGCACAAATGCGCCACGCCTTGCCACAGCGGTCCTTGCTATCCATGCACCAGAACAGACGTCATACAGTGTCGATGCGGCAGCAGCAAGATAACAGTGCCATGCGGTACCAGAAAGAGAATCAAGCCACCGCCGTGCAATAAATCCTGCAAGATTCCACCTATCTGCCACCACAGCAAGAGGGAAACGCACAAGTGTCATCAAGGTCCATGCCAACCGTGTAAAAAGGTCTGCGGATTAACGCACAAGAGATGCGGTCACTCTTGCCCGGCCACTTGTCACACCAAAGTCTGGGTGAAGAGTAAAGCGAACGGAATAAAGGCGCAGCCTATTGGACTCTGGGAGAAACCGAAGGACATTATGGAGCTGAAGACTTTACCATGTCCACCGTGCGAAGTTTCTGTGCCTGTGACCTGTCTTGGTGGTCACGAAACGCGCCCTTGGCCGTGTCACATGTCGAAACCGAACTCCTGCGGCAGACTTTGCGGCCAGCTACTGCCATGCAAGAATCACACCTGCGAATTGATTTGTCACAAGCTACAAACTTCCAACGACGAATCCAACAGCGGTACTCCGTGCATGGAATGCGAGGAGGAATGCAATTTCGCACGACCGTCAGGTTGTACGCACACGTGCCCGAAACCTTGTCACCCAGCGCCATGTAAACCATGCAAGCAATTGGTGCGAATCTCTTGTCATTGCGGCATTAGCACCCTATACCGGCATTGTGTAAACCTGACATCCGTAACGAGTAAGGAACGGGACGAGTTACTCAAATGTGGAAACCAATGTCCAAAAAATTACTCATGTGGCCACCGTTGCGTCAATGATTGTCATCCAGGAGAGTGTAAAGGTGGAGAGGGATGCAGCAAGAAAGTTAGATTATGGTGTAAGTGTAAACGGATCAAGAAGGATTTTCTCTGTTCGCTTCTTCAAAAGGAGCAGATCACCGTAGAATGCGATAGCGTGTGCGAATCATTGAAGAATGAAAGAAAGGAAGCTCAGGAAGCTATGATGGCGAAGAAACTAAAAGAGGAGGAACTGCGCAATCGGGAAGAGATTGAGAAGTTCGAGAAGAAGTTCAAGCCACGACGAAAAAAGAAGGATAAGTACGAGAGCTCGGAACAGTCCCAACAAAATGCAAGGAATAAGTATCGCAGTTTATGGAGTTTAGCAATTATCGTAAGCATTATAGGGATAATAATAGTGTATGTGACTGTTCCTGACTTAAGAATACCAGTATTGAGTTGA
Protein Sequence
MQKFKRAQAQNKLSIERHLEANASLNSSSEEEDEANEEDVQNVVGKVLSAYQGQSTDAEKVITYLVNSFQTSSAVCLICISTVKKTDPIWNCDKCYAFLHISCILHWINDSLSYKRAKGITPIWACPKCRMEYDQDQIPRSYKCFCKKTVDPLHQPWVIPHSCGEACGKLLQPECGHKCVLLCHPGPCPPCAKMVSVKCYCGKLPAQPRRCNAKNWSCGTVCNQKYESCVHSCNSLCHTGECSPCVEIVLLKCRCKSNEKTGKCYEGTWICEKPCNRRFSCNVHSCESTCHLPGDCGNCPLEKNRCCPCGKKRYEVSCRRQQVPTCGDTCGKLLDCGSHFCNMRCHTDRCGQCLEVVMKACRCGSYMKEIACAKEFHCNKKCMQMRLCGRHLCNKKCCDCITKNTSNPCEKTCENTLNCRKHKCATPCHSGPCYPCTRTDVIQCRCGSSKITVPCGTRKRIKPPPCNKSCKIPPICHHSKRETHKCHQGPCQPCKKVCGLTHKRCGHSCPATCHTKVWVKSKANGIKAQPIGLWEKPKDIMELKTLPCPPCEVSVPVTCLGGHETRPWPCHMSKPNSCGRLCGQLLPCKNHTCELICHKLQTSNDESNSGTPCMECEEECNFARPSGCTHTCPKPCHPAPCKPCKQLVRISCHCGISTLYRHCVNLTSVTSKERDELLKCGNQCPKNYSCGHRCVNDCHPGECKGGEGCSKKVRLWCKCKRIKKDFLCSLLQKEQITVECDSVCESLKNERKEAQEAMMAKKLKEEELRNREEIEKFEKKFKPRRKKKDKYESSEQSQQNARNKYRSLWSLAIIVSIIGIIIVYVTVPDLRIPVLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01476621;
90% Identity
iTF_01476621;
80% Identity
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