Hsub018433.2
Basic Information
- Insect
- Harpagoxenus sublaevis
- Gene Symbol
- -
- Assembly
- GCA_030770355.1
- Location
- JASTWR010000168.1:201542-207416[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.006 1.1 11.2 3.8 1 23 23 46 23 46 0.96 2 20 1.4e-05 0.0025 19.5 0.5 1 23 52 74 52 74 0.97 3 20 0.0035 0.64 12.0 6.3 1 23 80 102 80 102 0.98 4 20 0.00022 0.039 15.8 2.2 1 23 108 130 108 130 0.98 5 20 0.034 6.2 8.9 5.5 1 23 136 158 136 159 0.96 6 20 0.00011 0.02 16.7 2.6 1 23 177 200 177 200 0.95 7 20 0.48 87 5.3 0.8 3 23 211 231 209 231 0.95 8 20 5.6e-07 0.0001 23.9 1.2 1 23 237 259 237 259 0.98 9 20 9.3e-06 0.0017 20.1 1.3 1 23 265 287 265 287 0.97 10 20 3.7e-07 6.8e-05 24.5 0.7 1 23 293 315 293 315 0.99 11 20 0.54 99 5.1 0.4 3 23 352 373 351 373 0.96 12 20 0.0001 0.019 16.8 1.0 1 23 379 402 379 402 0.97 13 20 0.7 1.3e+02 4.7 0.3 2 23 408 430 407 430 0.95 14 20 0.14 25 7.0 0.2 1 23 436 459 436 459 0.77 15 20 0.046 8.4 8.4 0.3 2 23 466 488 465 488 0.94 16 20 5.6e-06 0.001 20.8 2.3 1 23 508 531 508 531 0.96 17 20 0.0026 0.48 12.4 0.1 1 23 542 564 542 564 0.95 18 20 0.005 0.9 11.5 4.0 1 23 570 592 570 592 0.97 19 20 6.2e-07 0.00011 23.8 1.1 1 23 598 620 598 620 0.98 20 20 2.2e-05 0.0039 18.9 0.1 1 21 626 646 626 647 0.96
Sequence Information
- Coding Sequence
- ATGTTTCTTATATTGTCCCGTCTATTTGAAGACAAGTGGCGACGATGGGGTAGATCGCGCGACGTGCACCAATGCGTCAAATGCGGGGCACGCTTCCGTCACACGCGAAAGCTCGTGGAGCACCTGAAGAACCTGCACAATATCGACCGGGCGTTCAGCTGCGACGAATGCAACAAGACGTTTCGCAGCCCGATGAACATAGCTCGTCACAAACTGATCCACACGGGGGTGAAAATGTTCACCTGTGATCTCTGCGATTACTGCACCAATCAGAAGTCCAATCTGGAGTGTCATCTTCGGCGGCACGCGAAGGACTATAGCTTCAAGTGCGAGACGTGCGGCAAGGGCTTTTTCCACAACACCGAGTACCTGGAGCATCAAAACGCGCACACGAACAAGAGACTGTATCGTTGCGAGCATTGCTCCAAGCAGTACTTGTACAAGAAGAATTTATCGGTGCACCTGGTGACGCATCACGTCGGCGCCGGCAAGCAGGCCGCCGCGCTCGTGAGAAGCGCGAGGATGAGGCACGCGTGCAAATTCTGCCCGGAGAGATTCGTGTACAAGAGATTGCTGGAGAGGCACATGAAGAACCAGCATGGATTCGCGAACGCACCGGCGAAGCACCTGTGCGACCTGTGCGGCGCGGAACTCTCGTCGATGAGACGACTGATGGTGCACAAACGCAATCACGCGGGCGAGAGGATTTTCGAGTGCGAAACGTGCGACAAGAAGTTCGCCAGCAAGGAGAACCTGAGCATTCACAAGCGGACGCACACGGGCGACAAGCCGCACGTGTGCCCGCAGTGCGACCGCGGTTTCACCCAAAGGACATCCCTGGTCCTTCATCTGCGGTACCACTCGGGTCAGAGGCCTTACCAGTGCTTGGACTGCGGCAAGGGATTCGTGTCCAACACTTTACTCAAGAGGCATCGCAAAGTGCACGAGAAGATCGTGCAGCCGAAGCTCCAGTGGACGAATAATCACGATTTGAAAGTGAAGAACGAAGACCTGCCTGATCTTGGACAGAAATTCGAAAGTGGTGAGAAGATCTGCGAGCTGTGCCAGGCAAAATTTCACTTTGTTACCAGACTGGTCGCACACCTAAGGATAGCGCACGGCATCCTTCGACCCTTTAAGTGCGTCACCTGCGACAAGAATTATCCCCAGCAGTTCATGCTTAACGCCCACGTGAAGAAGTCGCACACGCCGAAGACCGTGCCGTGTAGCCAGTGCAGCTTCATGGGTGTCAACGTGACCGACGTGGAGAGGCACAGGCGACGACGTCACCGAGCCCCGCCGCAATTCACGTGCGAAATTTGCAGCCAGGATTTTGCCGATAACAAGGACACTCTGATCGCGCACACGACGATGCACGATCTTATGCAGTATCAGCGATGCAACGCGTGCGGTAGCATCTTCAACGATGTGTACAGCTTGAAGGAACACAATCGTCTCTACCACTACGATCCTGCGTCGGACGAGAAGTCGTTCGAGGAGTCCAGCGAGAACGAGTCCGAGCACAAATGCGACATTTGCGGCAAGGTCTACAAGTATAGGTCGATGCTGAAGCAGCACAAGATCAGGGCTCATGGTGACCCGTCGAGCCACGAGAGACGCAGGTACCTTTGCGCACTGTGCGGCAAGGAGTTGAAGACCGCGAAGGGCCTCGAAATCCACAACAGGTCGCACACCGGCGAAAAACCGTATACCTGCGAGGTGTGCGGCAAGTGTTTCGCCTGTGAGACCCTGTTGAGGACCCACAAAGTCACCCACACCGGAGAAAGAAAGTACTCGTGCGATCAATGCGGCAAGGCTTTCACGCAGAGATCCACGCTGGTTGTTCACAAGCGATATCACACGGGCGAACGACCGTACGTTTGTCCTCGATGCGGTAAGGGTTTCGTCACACGAACTGTCCTTAATACTCACATGAAATCCTGTCGTTGA
- Protein Sequence
- MFLILSRLFEDKWRRWGRSRDVHQCVKCGARFRHTRKLVEHLKNLHNIDRAFSCDECNKTFRSPMNIARHKLIHTGVKMFTCDLCDYCTNQKSNLECHLRRHAKDYSFKCETCGKGFFHNTEYLEHQNAHTNKRLYRCEHCSKQYLYKKNLSVHLVTHHVGAGKQAAALVRSARMRHACKFCPERFVYKRLLERHMKNQHGFANAPAKHLCDLCGAELSSMRRLMVHKRNHAGERIFECETCDKKFASKENLSIHKRTHTGDKPHVCPQCDRGFTQRTSLVLHLRYHSGQRPYQCLDCGKGFVSNTLLKRHRKVHEKIVQPKLQWTNNHDLKVKNEDLPDLGQKFESGEKICELCQAKFHFVTRLVAHLRIAHGILRPFKCVTCDKNYPQQFMLNAHVKKSHTPKTVPCSQCSFMGVNVTDVERHRRRRHRAPPQFTCEICSQDFADNKDTLIAHTTMHDLMQYQRCNACGSIFNDVYSLKEHNRLYHYDPASDEKSFEESSENESEHKCDICGKVYKYRSMLKQHKIRAHGDPSSHERRRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHKVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00869051;
- 90% Identity
- iTF_01409381;
- 80% Identity
- -