Hsub012313.1
Basic Information
- Insect
- Harpagoxenus sublaevis
- Gene Symbol
- -
- Assembly
- GCA_030770355.1
- Location
- JASTWR010000075.1:158879-161966[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00017 0.03 16.1 4.5 2 23 372 393 371 393 0.97 2 15 0.00028 0.051 15.4 2.6 2 23 403 425 402 425 0.95 3 15 4.2e-06 0.00076 21.2 1.5 2 23 511 532 510 532 0.97 4 15 1.9e-05 0.0034 19.1 3.6 1 23 538 560 538 561 0.96 5 15 0.00011 0.02 16.7 1.3 1 23 566 588 566 588 0.97 6 15 4.3e-06 0.00079 21.1 1.3 1 23 608 630 608 630 0.98 7 15 1.4e-06 0.00026 22.7 1.2 1 23 636 658 636 658 0.97 8 15 1.1e-05 0.002 19.8 2.4 1 23 664 686 664 686 0.98 9 15 0.0016 0.29 13.1 0.2 1 23 692 714 692 714 0.99 10 15 4.9e-05 0.0089 17.8 1.1 1 23 720 743 720 743 0.92 11 15 2.2e-05 0.004 18.9 1.3 1 23 749 771 749 771 0.98 12 15 0.00049 0.088 14.7 4.7 1 23 777 799 777 799 0.98 13 15 6.2e-06 0.0011 20.6 0.4 1 23 805 828 805 828 0.97 14 15 6.7e-06 0.0012 20.5 0.8 1 23 834 856 834 856 0.96 15 15 1.1e-06 0.00019 23.0 4.8 1 23 862 884 862 884 0.99
Sequence Information
- Coding Sequence
- atgacaaaattaataatgaataaaGAAATGCCGTGTGGAAGTGTGGAATGGGTACCACAAAACGCATACATGCATAATTCTTTGGATCACTTGCTGCCGGGAGATAGAAATCAGGACTTCTTAATCATAAAGCAGGAAGCGGAATTTTTTCGAAGTACTCTGAATTCACAGTCTGCGCAAAACAAGGCGCATCTGCAAGTCTTAACTAAAGAGGAGAACAAGGAAATCAAGCAACAGAACAGCTATTTGGATGCATTGGCAACAGCCTGTCAAACGGACTCTTTAAATTGGCCACCCAAAATATTGACTGATGTTCCagagaaattatataataaaggtCGCATTGATGTAATAGAGATGACAATAGATCCgacgtttaattataaatatcttttcgTTTATGAAGATCAGTTTTCCAAGTTTGTTGTACTAAAGGCTCTCCGTAGTGATACAGCCAGAGAGGTCGCGGTGAATCTGTTAGATGTGTTGGGGATCATAGGGGTACCGCGAGTACTGCAGAGCGGCAATGGACGTAAGTTTGCTGAACAAGTTGTGCATGAACTACGTACGCTGTGGAATGATTTGTTCATACTGCACGGGGACACATCTAAGTGTGAAGTTAGCTACAGGGATTTTAAGAGCTTGCTCGAATCCTGGATGAGAAAAAATCCAACTAGGACCTGGTGCGAAGGGCTGAACTTCGTACAGATCGTTCACAACTCGACGTATCACTGCCAGAACGGCAAGGTTCCGTACGACATATTGTTCAGGCAAAGCGTACGCGAAAATTTTCAAGGTATAGAAAAAGATGTGGAAGATCTGAGGACGGAAGAAGAATGGCTCAAACACTTGTCAAGTAAGAAGAACGGAGATGGGACTGCAACGACGGAAGACACGCATAATACATCAAATAGTATCAATCAGTGCGAAGAAAACGAAAATGTACGAGATACACGAAGTCAAAACGCGCTTTCGAAAGTCAACGATGTAAATATCTTTAGTTACGTCAACGTGAAGAATGAATCTCTGGCGAATAACGCAACGGATTCAATGTCTACAGATGAAACAGACATGAAGAATGAATTGAAAGTCAACGAAGATACTGAATCCCTCAAGTGCAAGTACTGTCAAAAGCAGTACATGAAAATAGGGCATTTGAAGAACCATATGAGAACTCATAAAGCGAAACAACTTAAACAAGTTCTCCATTGTAAGCTGTGCAATAAAACATTTAGCGTTCCGAGATTGTACGCGAAGCATATGAAGCAGTCACATGGACAGGATAAATTAGCTGATGAGGAAAGAGTCAGTAGAAATACGAGAAACAACGCCAATACATTAACAGCTACACTTAGAGAAAGATCTGTAATTCAAGCAACACACGAGATATCCGATCCCGAGACAACGAGCAAAGATTGTGATTCATCACCGGGCACGAAAGAGTTCTCCGGCAAGGTCAGCAAGAGCTCGAACCAAACCGGTAGACGGAAGCTGCCTGCGGAGAGTCGCGTGTCGAAGTTACAATCTTTACAGTGTACGTATTGCAAGCAAAAGTTCAGCTTCCCGAGCGTGCTGGAGAGACACATGCGATCGCACACGAACGAACGGCCGTACGTGTGCGAGGTGTGTAACAAGAGCTTCAAGCAGTTGGGCCATCTCAGTCAGCACTCGCTGACCCATCATGACTACCGTTCGTTCCAGTGCACGGTGTGCGGCGTAAAGTTCAACTCGCTGGATTTGCTGAAGCAACATGCCCACTCGCACAAGGgtgagacgacgacgacgacggcgacgtccAAGATACGCGACGTCTATCGTCTATTCGAGTGTGACAGCTGCAAAAAGGTGTTCACGACGAAGAGCGTGTTGGAGCGGCACATATTCACGCACACGCAGGAACGCCAGTACGACTGCAAGGTATGCGGCAAGCGGTTCAAGCAGGCCGGTCACGTCAAGTCGCACATGCTGGTGCACACGGGCGAGCGTCGCTTCCAGTGCACCGTCTGCTCAAAGCGCTTCAGCCTGTCGAACTCGCTGAAGAAGCACATGTACGTGCACAACGGCGAGAAGCCGTATCAGTGCGACGTATGCGGCGCGCGTTTCCTGGAGAAGCGCAACCTCAACGGCCACCTGCTGACGCACACCAACGAGCGTCCGTACTGCTGCAAGATCTGCGGCAAACGTTACACCCTGGCGGACACTCTGCGCCGTCACGTTAGCGCCGCGCACGAGGACGGCCGTACGTATCAGTGCGAGATCTGCGCCAAGATGTTCAAGCAACTGGCACATCTGTCGGTGCACAAGAAGGTGCACAACGACGAACGGCCGTTCCAGTGTCATTTGTGCGAAAAGAACTTCAAGCACAAGAACGTGCTCAAGTCGCATCTGGCGATCCACGCGAACGTACGGCCGTTCGAATGCGACGTGTGCAAGGCGACGTTCGTCAGGAAGACGAATCTGCAGACGCACATCTCGTCCGCGCACATGAACGAGCGTCCGTATTCCTGCACCATCTGCGGTAAGCGCTTCAAGCAGATCAGCCATCTGAACGGCCACGTGGTGGTGCACAGCAATCTGATGCCCTACAAGTGCGATTACTGCGACCGCCGGTGCAATCGGCTCGACAATCTGAAGAAGCACATGCGCCTCCATATGAAGAACAAGGAGTGA
- Protein Sequence
- MTKLIMNKEMPCGSVEWVPQNAYMHNSLDHLLPGDRNQDFLIIKQEAEFFRSTLNSQSAQNKAHLQVLTKEENKEIKQQNSYLDALATACQTDSLNWPPKILTDVPEKLYNKGRIDVIEMTIDPTFNYKYLFVYEDQFSKFVVLKALRSDTAREVAVNLLDVLGIIGVPRVLQSGNGRKFAEQVVHELRTLWNDLFILHGDTSKCEVSYRDFKSLLESWMRKNPTRTWCEGLNFVQIVHNSTYHCQNGKVPYDILFRQSVRENFQGIEKDVEDLRTEEEWLKHLSSKKNGDGTATTEDTHNTSNSINQCEENENVRDTRSQNALSKVNDVNIFSYVNVKNESLANNATDSMSTDETDMKNELKVNEDTESLKCKYCQKQYMKIGHLKNHMRTHKAKQLKQVLHCKLCNKTFSVPRLYAKHMKQSHGQDKLADEERVSRNTRNNANTLTATLRERSVIQATHEISDPETTSKDCDSSPGTKEFSGKVSKSSNQTGRRKLPAESRVSKLQSLQCTYCKQKFSFPSVLERHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCGVKFNSLDLLKQHAHSHKGETTTTTATSKIRDVYRLFECDSCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYSCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHMKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01406725;
- 90% Identity
- iTF_00885322;
- 80% Identity
- -