Basic Information

Insect: Harmonia axyridis
Gene Symbol: -
Assembly: None
Location: chr6:31826351-31828417[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 6.8e-06 0.17 12.5 0.2 21 46 216 240 210 242 0.80

2 5 7.5e-06 0.19 12.4 0.0 20 45 241 266 239 271 0.91

3 5 0.16 4.2e+03 -1.5 0.1 27 44 305 319 302 328 0.69

4 5 0.57 1.5e+04 -3.3 0.1 21 30 324 333 316 335 0.76

5 5 0.00031 8.1 7.2 0.1 20 49 351 380 337 384 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	6.8e-06	0.17	12.5	0.2	21	46	216	240	210	242	0.80
2	5	7.5e-06	0.19	12.4	0.0	20	45	241	266	239	271	0.91
3	5	0.16	4.2e+03	-1.5	0.1	27	44	305	319	302	328	0.69
4	5	0.57	1.5e+04	-3.3	0.1	21	30	324	333	316	335	0.76
5	5	0.00031	8.1	7.2	0.1	20	49	351	380	337	384	0.85

Sequence Information

Coding Sequence: ATGAATTATGATGCATTAGATCTATTAGCAAGGAACTTACTACATATAATAAACAATTATAACATGGAAAGTATTTGCAGAACTTGCCTAAGAACTCAGGAATCTTTGTCCTCCTTATTTGATCAGGAAGATTTGATAATGAGAATAAAAGATATATCTTCTGTTCAGTTAACTGATATATATGGCTATCCAACAAAAATTTGTGAAGAATGTCTTTCAAATGTTAACAGATTATACAACTTTCGTAAGGTGATTCAGAATTCTGAATTAGAACTTCGCGAGAGATTCGCTGCAGAAGAAAGGGATAAATCCACAATTAAAGATAAGAAATCTCAAAAACATAGAGAAAAAATTGAATTTGATGAAGAGGACGAGAAGCCTTTGATTTACATTAAGACTGAATTAGAGCATGCTACTGAAGCAGATAATACTAGAGATGAAAATGATTGGTCACCAGATCCAGATATAACAAATGATGACTATAATTCAGAGGAAGATTCTAATCCCAAATTATTTGGGGAAGTTAATTTGAGGGAAGCTGAAGACTGTTCTAGACTGTTGATGCCTGTCAAGAAATGTTATTGCAAAGAGTGCGGAATTGAATTTTCTTCACGATTTAAACTTTATAATCACAGAAGGACAAATCATGTTGTTCCAGGAGTTTGTAGTATTTGTGGTATTATTGTTAGGGCAGATAATTTAAGAAGGCATGTTCAATTACACTCAGAGGGACCAGCATCTTGTCATCATTGTGGAAAAGTGTTCAAAAATTCAGAATCCTTAAGGGGCCATTTATTGATCCATAGAGGTCACATTTTCACTTGTGAGAAATGTGGCAAGACGTCTAAAGTTCGTGCAGAGCACAGAAGACATATGAAGACTCATGCAGATCCGGAAATTGGAAAAATGATGTGTAATATTTGCGGAAAGAAGGTACGAGATTTGAAGAAACACATGCATAGTCACACAGGTGAAAGACCCCATATTTGCAACTTCTGCCAAAAAGGTTTCACTAGTCCCTATGCTTTAAAAGTTCATACTCGACAACATACAAATGAGAGGCCCTATGTTTGTAATATTTGTTCTTCTGCTTACCCTCAAAAAGTATCTCTTGTCTCCCATTTAAAATCCAAACATGGCATCAAATATGAGAATCCAGAATCTACTTGA
Protein Sequence: MNYDALDLLARNLLHIINNYNMESICRTCLRTQESLSSLFDQEDLIMRIKDISSVQLTDIYGYPTKICEECLSNVNRLYNFRKVIQNSELELRERFAAEERDKSTIKDKKSQKHREKIEFDEEDEKPLIYIKTELEHATEADNTRDENDWSPDPDITNDDYNSEEDSNPKLFGEVNLREAEDCSRLLMPVKKCYCKECGIEFSSRFKLYNHRRTNHVVPGVCSICGIIVRADNLRRHVQLHSEGPASCHHCGKVFKNSESLRGHLLIHRGHIFTCEKCGKTSKVRAEHRRHMKTHADPEIGKMMCNICGKKVRDLKKHMHSHTGERPHICNFCQKGFTSPYALKVHTRQHTNERPYVCNICSSAYPQKVSLVSHLKSKHGIKYENPEST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00965466;
90% Identity: iTF_00130969;
80% Identity: iTF_00765075;