Basic Information

Insect: Harmonia axyridis
Gene Symbol: -
Assembly: None
Location: chr4:18780900-18784938[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0013 0.12 13.4 1.8 2 23 184 206 183 206 0.92

2 10 0.1 9.1 7.5 1.5 1 23 212 234 212 235 0.93

3 10 1.1 96 4.2 1.9 1 23 240 262 240 262 0.93

4 10 0.00021 0.019 15.9 0.6 3 23 270 290 268 290 0.97

5 10 4.8e-07 4.3e-05 24.2 0.3 1 23 299 321 299 321 0.99

6 10 7e-07 6.3e-05 23.7 0.8 1 23 327 349 327 349 0.99

7 10 0.00025 0.022 15.7 2.6 1 23 355 377 355 377 0.95

8 10 2.5e-05 0.0023 18.8 3.7 1 23 383 405 383 405 0.98

9 10 5.1e-05 0.0045 17.9 2.7 1 23 411 433 411 433 0.98

10 10 0.00011 0.0096 16.8 8.4 1 23 439 462 439 462 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0013	0.12	13.4	1.8	2	23	184	206	183	206	0.92
2	10	0.1	9.1	7.5	1.5	1	23	212	234	212	235	0.93
3	10	1.1	96	4.2	1.9	1	23	240	262	240	262	0.93
4	10	0.00021	0.019	15.9	0.6	3	23	270	290	268	290	0.97
5	10	4.8e-07	4.3e-05	24.2	0.3	1	23	299	321	299	321	0.99
6	10	7e-07	6.3e-05	23.7	0.8	1	23	327	349	327	349	0.99
7	10	0.00025	0.022	15.7	2.6	1	23	355	377	355	377	0.95
8	10	2.5e-05	0.0023	18.8	3.7	1	23	383	405	383	405	0.98
9	10	5.1e-05	0.0045	17.9	2.7	1	23	411	433	411	433	0.98
10	10	0.00011	0.0096	16.8	8.4	1	23	439	462	439	462	0.98

Sequence Information

Coding Sequence: ATGTTGAGAGCTACAGATGAAAATGTCATGGAATCTTATTGCAGATTATGTGGAGAATTATCGTTAGAACTCCTCTCTATTTTGGAGGATTTAGAGCTTCCAGACAAAATATTCCAATTGTTTAATGTGAAAGTCAATTTAGAGGATCAATTACCGACTTTAGCTTGTCAAAAATGTTGGGATATGGTTCAAAATACATGGATAGATTATTTAAGAGTTCAGAAAGCTCAGGAACATTTGAATGTACTTTTGGAATCGTTGGCTGCTATAGATCCTATTTGTCAGGATGATGATAACAATATTGACTTTTCTAATGTAGAATCTTCGAAACTAATCGATTGTGTTATTGATAGTGATCCGTTATCACTAGTTAAAACTGATACAGACATTCAGAAAAATGTTAAATCAATTAAGACAAAAAGAACTTCACAAAAGAAAAAGGATACATCTGAACCTGAAGAACTATCAGAATTGAGTATTATTGAGTTTAGAGAAGATGGTAGTTGTATTCCTAAAGAAGATTTATTTGGATGGAAGTCTTACCCCTGGATTTGTTGCGACTGTCAACAAAATTTTAGATCTCCTGAAGAGTTGAAAAATCATTTTTCATCTAATCATAATCAGGTTCCGAGATATTCATGTGTAGATTGCCAAAAAATTTATAGTAAATATAATGTTTTTCTGGGTCATGTAAAAATACATCATATAACTCTTAGGTATTGCTGTGATGTTTGTCATAAATGGTATCCTACAATTAACTCTGTTGAAAAACATCGTGCTGAACACAAAGAAGAATCACAATATGGTTGTTTGAATTGTGGTAAAAAGTTTAGAATGCAGTCTGCTCTTGTGCTTCATTCTAGGTCTCATCTTCCAGCTGAAATAAAAAATAGATACCAGTGTGATGAATGCCCTAAACGATTTGGAACTAAACCAAATCTTATGGCTCATAAAAGAATTCATTCGGGAGTGAAAGATTATACATGTGACCAATGTGGTAAAAGTTTTTTTCAAAAAGGAAATTTAGATAATCATGTCTTGACGCATACTGTAGCCAGACCTTTCAACTGTAGTACGTGCAACAAGTCTTTTAAAACATTAGTTCGACTCAGAAAACATTCTTCAGTACATTCAGGCTTAAAACCTCATAAATGTGATATTTGTGGAAGACAGTTTAGAGAACGAGGAACTTTGAAGGAACACCATAGAATACATACAGGAGCTATGCCCTTTACATGTGAATTTTGCGGAAAAAATTTCAGGTTCAAAGGGGTTTTAACTACTCACAGAAGGCAGCATACTGGAGAACGCCCATATTCTTGCCATGAATGCCAGCATCATTTTACAAATTGGCCAAACTATAACAAACATATGAAAAGGAGGCATGGAATAAATACAAGTGTTACAGTTAGAAAACCACAAGCCATTCCTCCTACTGGTATGCCTAACAGAAACCCACCAGGAACAGTTTTGGCACAACCTATAAGTGTACCTGAGGTACAGGAAGGAACGTTTGTTGAGCAACACCAAGCCACTTTTTTTCCAGTCTTAGGATTGTATAATATAGCAGAAGATATATTGCATCAACAAAGAGTCCAGTGA
Protein Sequence: MLRATDENVMESYCRLCGELSLELLSILEDLELPDKIFQLFNVKVNLEDQLPTLACQKCWDMVQNTWIDYLRVQKAQEHLNVLLESLAAIDPICQDDDNNIDFSNVESSKLIDCVIDSDPLSLVKTDTDIQKNVKSIKTKRTSQKKKDTSEPEELSELSIIEFREDGSCIPKEDLFGWKSYPWICCDCQQNFRSPEELKNHFSSNHNQVPRYSCVDCQKIYSKYNVFLGHVKIHHITLRYCCDVCHKWYPTINSVEKHRAEHKEESQYGCLNCGKKFRMQSALVLHSRSHLPAEIKNRYQCDECPKRFGTKPNLMAHKRIHSGVKDYTCDQCGKSFFQKGNLDNHVLTHTVARPFNCSTCNKSFKTLVRLRKHSSVHSGLKPHKCDICGRQFRERGTLKEHHRIHTGAMPFTCEFCGKNFRFKGVLTTHRRQHTGERPYSCHECQHHFTNWPNYNKHMKRRHGINTSVTVRKPQAIPPTGMPNRNPPGTVLAQPISVPEVQEGTFVEQHQATFFPVLGLYNIAEDILHQQRVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00999041; iTF_00020746; iTF_00394766; iTF_00130771; iTF_00349492; iTF_00965400; iTF_01024316;
90% Identity: -
80% Identity: -