Hhal006323.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:9931-20449[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0011 1.1 9.0 0.2 21 48 79 106 73 109 0.84 2 11 0.0065 6.2 6.5 0.8 18 48 105 135 104 140 0.86 3 11 0.38 3.6e+02 0.9 0.1 18 45 134 161 120 165 0.82 4 11 0.0044 4.2 7.1 0.2 21 49 166 194 162 198 0.91 5 11 0.0011 1 9.0 0.2 17 49 220 252 212 256 0.88 6 11 0.037 35 4.1 0.4 18 49 250 281 248 286 0.86 7 11 1.7 1.6e+03 -1.2 0.1 18 30 279 291 277 297 0.78 8 11 0.029 28 4.4 0.1 26 49 316 339 299 343 0.91 9 11 0.054 52 3.6 0.1 18 48 337 367 336 371 0.85 10 11 0.0075 7.2 6.3 0.1 19 49 367 397 365 401 0.84 11 11 0.0039 3.8 7.2 0.2 18 49 395 426 394 430 0.84
Sequence Information
- Coding Sequence
- ATGGCTGATGAAACCTATCCTTCAGTATCAACGGTTGCTATCAAGGAAGAGGAAGAACTGCAAATTGATTTTGGTATAAGTTACGATTCAAAGAATGTTcctataaaagaagaaatgagtGATGAAGCTGAGTTAACTTcAGGTGGACTTACTCATgtaaaacaagaaacatttgTGAAACAAGAAGAAGAACTGCTAATCTCAGATGAAGGTGTCAAGGATAGTTGTCATAGAGAAGAGAAATCCCACCAATGTCCTTATTGTGATTACAAATCTATACAATCAGGAAAcatgaaaaaacatataatggcccgtcatacaggtgagaagccCCATCAGTGTCCTCACTGTTATTATAAATCAACCAAATTTGAACATATGAAAGGTCATATTATGGCCCGTCATACAGGTGAGAAATcttatcaatgtcctcattgtgattataaatcagtgcAATCTGGAAgtatgaaaaatcatataatggccTGTCACACAGGTGAGAGACCCTATGAATGTCcttactgtgattataaatcaacacaatctggacatatgaaaAGTCATATAACGGCTcgtcatacaggtgagaagACCCATCagtgtcctcactgtgattataaatcaacaAGATTCGGACATATGAAAACTCATATAATGGCTCGTCATACAACTGAGAAATCCCATCAATGTCCTTactgtgaatataaatcagtagGATCTGGAAATATGAAAAGACATGTAAGCGCCCGTCACACAGGTGAGAAGTcccatcaatgtcctcactgtgattatagATCAGTGCAATCTGGGAGTATGAAAAATCATATAGTAGCCCGTCACACAGGTGATAAACCCtatcaatgtcctcactgtgattatacatcagtaatatttggaaaaatcaaACCACACATGATGGCCCATCATACAGataaaaagttctttaaatGTCCCCACTGTGATTATATATCAGCACAATCTGGaagtattaaaaatcatattatggcCCGCCACACTGGTGAAAAATCTCATCAATGTccttattgtgattataaatcagtaggaTCTGGAAATATGAAAAGCCATGTAATGGCCCGTCACACAGGTGAGAAATATCATCAATGTCcacactgtgattataaatcagtaggaTCTGGCAATATGAAAAGACATATAATGGCTCGTCATACAGGAGAAAAGTCTCATCAATGTCcacactgtgattataaatcagtaggaTCTGGCAATATGAAAAGacatataatggcccgtcacGCAGGTGAGAAGCCTCTACAATCTGTATTATAA
- Protein Sequence
- MADETYPSVSTVAIKEEEELQIDFGISYDSKNVPIKEEMSDEAELTSGGLTHVKQETFVKQEEELLISDEGVKDSCHREEKSHQCPYCDYKSIQSGNMKKHIMARHTGEKPHQCPHCYYKSTKFEHMKGHIMARHTGEKSYQCPHCDYKSVQSGSMKNHIMACHTGERPYECPYCDYKSTQSGHMKSHITARHTGEKTHQCPHCDYKSTRFGHMKTHIMARHTTEKSHQCPYCEYKSVGSGNMKRHVSARHTGEKSHQCPHCDYRSVQSGSMKNHIVARHTGDKPYQCPHCDYTSVIFGKIKPHMMAHHTDKKFFKCPHCDYISAQSGSIKNHIMARHTGEKSHQCPYCDYKSVGSGNMKSHVMARHTGEKYHQCPHCDYKSVGSGNMKRHIMARHTGEKSHQCPHCDYKSVGSGNMKRHIMARHAGEKPLQSVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764100;
- 90% Identity
- iTF_00764100;
- 80% Identity
- iTF_00764100;