Hhal006726.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:235625-249919[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0013 1.2 8.8 1.2 20 48 94 122 86 127 0.83 2 10 0.054 52 3.6 0.4 21 49 124 152 120 156 0.85 3 10 0.072 69 3.2 0.4 18 48 150 180 147 183 0.76 4 10 0.0017 1.6 8.4 0.1 18 48 179 209 174 213 0.88 5 10 0.0003 0.28 10.8 0.9 18 49 208 239 207 244 0.86 6 10 0.0032 3.1 7.5 0.2 18 48 237 267 236 271 0.89 7 10 0.0067 6.4 6.5 0.6 16 48 264 296 261 299 0.88 8 10 0.037 35 4.1 0.1 21 48 298 325 294 327 0.84 9 10 0.0031 2.9 7.6 0.1 18 51 324 357 322 360 0.88 10 10 2.3 2.2e+03 -1.7 0.1 26 44 361 379 357 384 0.72
Sequence Information
- Coding Sequence
- ATGGCTGATGAAACCTGTCCATCAGTATCAACAATTCTTATCAAAGAAGAGAAAGGATTGCAGATTGATAACGGTATAAATAACTGCAATGTTACTGTAAAAGAAGAAATGAGCTTTGAAGCTGAGTTAACTtCAGGTGGACTTACTCATGTTAAGCAAGAACAAGAACTACTTGTTCCCGATGAAGcAGGTGGACTTACTTATGTAAAACATGAAACATTTGTGAAACAAGAAGAAGAATTGCCTGTCTCAGATGAAGatGCCGAGGATAGTTGCCATAGAGGAGAGAAGTCCTGTCAATGTCCTTACtgcaattataaatgtatacaatcaggaaatttgaaaaaacatataatggcctgtcatacaggtgagaagccacaccaatgtcctcattgtgaatataaagcaGTTGACTCAGGAAAAATGAAACTacatataatggcccgtcatacaggtgagaagccCCATCAATGTCCTTACTGTgactataaatcaacaaaatttggACACATGAAAAACCATATAATGGCACGTCACACTGGTGAGAAGTCTTATCAGTGTTCTTACTGTGATTTTAAATCTACACAATCAGGTAATATGAAAAGacatataatggcccgtcacacaggtgagaaatctcatcaatgtcctcactgtgattataaatgtatacaatCAGGAAAtctgaaaaaacatataatggcccgtcacACTGGTGAAAAGTCACATCAATGTCCTctctgtgattataaatcaacacaatctggacatatgaaaaatcatataaagtCCCGTCACACAGGAGAGAAATCCTATCAATGTCCTTACTGTGATTATAGATCAGTACAATCAGGAAGTATGAGAAAGCATGTTATGGCCTGTCACACTGGTGAGAAACCCTATCAATGTCcttactgtgattataaatcagtaaatgATGGAAATATGAAAAGtcatataatggcccgtcatacaGGTGAAAAGTcccatcaatgtcctcactgtgattataaatcagtgcAATCTGGAAGTATGAAAAGTCATATAATGTTCCGTCATATAGGTAAGAAGTCCCATCAATGTCcttactgtgattataaatcagtgcTGTCTGGAAGTATGAAAAGACATATTATGGCCCTTCATACAGGTGAGGAGCCTAATCAATGtggattctaa
- Protein Sequence
- MADETCPSVSTILIKEEKGLQIDNGINNCNVTVKEEMSFEAELTSGGLTHVKQEQELLVPDEAGGLTYVKHETFVKQEEELPVSDEDAEDSCHRGEKSCQCPYCNYKCIQSGNLKKHIMACHTGEKPHQCPHCEYKAVDSGKMKLHIMARHTGEKPHQCPYCDYKSTKFGHMKNHIMARHTGEKSYQCSYCDFKSTQSGNMKRHIMARHTGEKSHQCPHCDYKCIQSGNLKKHIMARHTGEKSHQCPLCDYKSTQSGHMKNHIKSRHTGEKSYQCPYCDYRSVQSGSMRKHVMACHTGEKPYQCPYCDYKSVNDGNMKSHIMARHTGEKSHQCPHCDYKSVQSGSMKSHIMFRHIGKKSHQCPYCDYKSVLSGSMKRHIMALHTGEEPNQCGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764085;
- 90% Identity
- iTF_00764085;
- 80% Identity
- iTF_00764085;