Hhal005778.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:840242-850655[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0015 1.4 8.6 0.2 21 48 143 170 135 173 0.82 2 11 0.035 34 4.2 1.7 18 48 169 199 167 201 0.85 3 11 0.00034 0.33 10.6 0.3 21 49 201 229 197 233 0.87 4 11 0.06 57 3.4 0.7 18 48 227 257 226 259 0.80 5 11 0.0033 3.2 7.5 0.6 21 48 259 286 255 293 0.87 6 11 1.1 1e+03 -0.6 0.2 21 31 288 298 284 315 0.82 7 11 0.0049 4.7 6.9 0.0 21 48 317 344 307 347 0.88 8 11 0.00089 0.85 9.3 0.0 22 48 347 373 345 375 0.90 9 11 0.0074 7.1 6.3 2.3 19 48 373 402 372 408 0.86 10 11 0.25 2.4e+02 1.4 0.6 23 49 406 432 400 436 0.82 11 11 0.0001 0.099 12.3 0.5 16 52 428 464 424 465 0.91
Sequence Information
- Coding Sequence
- ATGAAAGTTACTGTTTTGATCAAAGAAGAACCTCAAGAAGTCCCCTTACAGGAggCTGAATTATATGATGAGTGTAAGGAGGAACCAGAAGTATTGCTTGAAGAGTGTGAGTCTGGGGAAGATCTTATGAAAATTAATCCAGAGACAACTGAAGATCATTCAGATACAAGTGACGAAAGTTCAGAAGAAGATCATGAGTTACAAGATGCTGTGATATATGATGGGTGCAAACAGGAACCAGAAATTTTGATTCAAGAATATTTAATAGACGGCTGCAAAGAGGAGTCTCATTTAATTGTGACTGATTTCAACCATGTAggagtTGAAGAGAATATGCCCGACATACTTCAAAAGATGGTAGAATACAGAGTTCTTTCAGAAAATGAATTCCATGTGAAAAAAAGTCTCAGGAAGACAGCTTACTCAAAAGAAAAACCTCATTCTTGTTCCCATTGCGACTACAAAACGGTGAAAGCTAGTAATTTAAGGAAGCATATAATGGCCCGCCATACTGGTGAAAAGCCTTGtcagtgtcctcattgtgaatataaagcaTTACAAGCTTGTGACttaaaaaatcatgttataACACATCATACAGGAGAAAGGCCTCATAAGTGTCCTTATTGCCTTTATGAAACAGTAAAATCTAGTAATTTGACAAAGCATGTTATGGCTCGTCATACTGGAGAAAAGCCCTATCAGTGCCCCCATTGTGACTATAGAACATTAATAGCTAGTAACTTAAAGAACCATATAATGGCTCATCACACTGGAGAAAATCCTCACCAGTGTCCACATTGTGAGTACAAAACCGTGCAAGCAACTAATTTGAAAAACCATATAATGGCTCACCATACTGGAGAAAAACCTCATAAATGTCCACATTGCagttttaaaacagtttatgTTGGTTATTTAAAGAGTCATATAAAGAGCCTTCACGCTGGAGATAAACCACAAAAGTGTCCTTACTGTGAATACATCACAGCAGAAACTTTAGATATGAAGAAACATTTAAAGATGGAACATGCGGGAGAAAAGCCTCATAAATGTCCAGACTGTGATTACAAAACTGTAAaagctaataatttaaaaaaacacatcaaGGCTCGACACACAGGAGAAAAGCCTTgtcaatgtcctcactgtgattacAAAACATCACATGCCAGTAATTTAAATAGGCATGTAATGGCTCATCATGGGGGTAGGAAACCTCATAATTGTCCCCATTGCAACTATAGAACAGCTTATCTTAGTCAGTTAAAGAACCATATAAAGGCTCGTCACACTGGAGAAAAGCCTCATCAGTGCCCTCATTGCGATTACGGAGCAGTGCAAGCTAATAGCTTAAAGAACCACCTCAAAGCCCATCACTCAGACAAGCCTTGTGATACAGATTCATCTATCTTCAAAACAAATGTATCAATTGCTGATATTAGTGTATCTCCTACTGATGCCAACaactaa
- Protein Sequence
- MKVTVLIKEEPQEVPLQEAELYDECKEEPEVLLEECESGEDLMKINPETTEDHSDTSDESSEEDHELQDAVIYDGCKQEPEILIQEYLIDGCKEESHLIVTDFNHVGVEENMPDILQKMVEYRVLSENEFHVKKSLRKTAYSKEKPHSCSHCDYKTVKASNLRKHIMARHTGEKPCQCPHCEYKALQACDLKNHVITHHTGERPHKCPYCLYETVKSSNLTKHVMARHTGEKPYQCPHCDYRTLIASNLKNHIMAHHTGENPHQCPHCEYKTVQATNLKNHIMAHHTGEKPHKCPHCSFKTVYVGYLKSHIKSLHAGDKPQKCPYCEYITAETLDMKKHLKMEHAGEKPHKCPDCDYKTVKANNLKKHIKARHTGEKPCQCPHCDYKTSHASNLNRHVMAHHGGRKPHNCPHCNYRTAYLSQLKNHIKARHTGEKPHQCPHCDYGAVQANSLKNHLKAHHSDKPCDTDSSIFKTNVSIADISVSPTDANN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764124;
- 90% Identity
- iTF_00764124;
- 80% Identity
- iTF_00764124;