Basic Information

Insect: Halictus rubicundus
Gene Symbol: -
Assembly: GCA_028454235.1
Location: CM052180.1:15441984-15448691[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.087 7.1 7.3 0.8 2 23 116 137 116 138 0.94

2 17 3.1 2.5e+02 2.4 4.7 1 23 144 166 144 166 0.97

3 17 0.03 2.5 8.7 0.5 2 23 172 193 171 193 0.97

4 17 0.00062 0.051 14.0 1.6 2 21 472 491 471 491 0.95

5 17 2 1.6e+02 3.0 1.0 1 23 559 581 559 581 0.82

6 17 2.1 1.7e+02 2.9 0.1 3 23 789 809 787 809 0.94

7 17 0.0045 0.37 11.3 0.3 1 23 817 839 817 839 0.98

8 17 0.14 12 6.6 1.2 2 23 935 956 934 956 0.95

9 17 1.7 1.4e+02 3.2 0.8 3 23 968 988 966 988 0.91

10 17 0.26 22 5.7 1.9 3 23 1039 1059 1038 1059 0.97

11 17 0.0025 0.21 12.1 0.6 1 23 1065 1087 1065 1087 0.98

12 17 0.031 2.5 8.7 0.3 1 23 1161 1183 1161 1183 0.97

13 17 4.5e-05 0.0037 17.6 0.6 1 23 1189 1211 1189 1211 0.97

14 17 0.0046 0.38 11.3 2.6 1 23 1259 1281 1259 1281 0.97

15 17 0.02 1.7 9.2 2.4 1 23 1287 1309 1287 1309 0.98

16 17 0.14 11 6.6 0.9 2 23 1401 1422 1400 1422 0.97

17 17 6 4.9e+02 1.5 0.5 2 23 1430 1451 1430 1451 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.087	7.1	7.3	0.8	2	23	116	137	116	138	0.94
2	17	3.1	2.5e+02	2.4	4.7	1	23	144	166	144	166	0.97
3	17	0.03	2.5	8.7	0.5	2	23	172	193	171	193	0.97
4	17	0.00062	0.051	14.0	1.6	2	21	472	491	471	491	0.95
5	17	2	1.6e+02	3.0	1.0	1	23	559	581	559	581	0.82
6	17	2.1	1.7e+02	2.9	0.1	3	23	789	809	787	809	0.94
7	17	0.0045	0.37	11.3	0.3	1	23	817	839	817	839	0.98
8	17	0.14	12	6.6	1.2	2	23	935	956	934	956	0.95
9	17	1.7	1.4e+02	3.2	0.8	3	23	968	988	966	988	0.91
10	17	0.26	22	5.7	1.9	3	23	1039	1059	1038	1059	0.97
11	17	0.0025	0.21	12.1	0.6	1	23	1065	1087	1065	1087	0.98
12	17	0.031	2.5	8.7	0.3	1	23	1161	1183	1161	1183	0.97
13	17	4.5e-05	0.0037	17.6	0.6	1	23	1189	1211	1189	1211	0.97
14	17	0.0046	0.38	11.3	2.6	1	23	1259	1281	1259	1281	0.97
15	17	0.02	1.7	9.2	2.4	1	23	1287	1309	1287	1309	0.98
16	17	0.14	11	6.6	0.9	2	23	1401	1422	1400	1422	0.97
17	17	6	4.9e+02	1.5	0.5	2	23	1430	1451	1430	1451	0.81

Sequence Information

Coding Sequence: ATGTCAGGAAGGCTGCCCCGTGTGCGTGCACTTCGTCCGCGACCTCAGCAGTCCAAACTAAAAGAAGGTAACCTTAAAGAGGATCTCAAGGAGACCGCGATGGAGGAGCAACAGTCGCGAACCTCCGCCGAGGAGCTTTCGTTCGAAGAGAAAGACGATGATGATTCCGCGAAGGACAGTTTAAAGGGCGAACAGGACGGCCTCGTCGACTGTACCGGGTCCTCGCAGAGCTACGAATGTAGAACCTGCAAACCACCGAAGCCTCTTCCGATTCTTAAGGCTTACCTCGACCATCTGAAAAAGGAGCACAAACAAAAGGGGAAATTCGCACGTGATGCTGGAAATCGATGTTCGATGTGTCCGTACGTTGCATTAAATTCGAGAGACCTCGAAACCCACCAGAGAGTGCATCATTTGAAAAGGAGATTCTTTCGATGCTCCAAATGCTCCTACGTAACGCATGTACGCGCTCGTTACACGAAACACGTGAAGTATCATTCCATGCCGATGATCAAGTGCGACGCCTGTGATTTTCGTACACCGTACAAGTGGAATTTGGATAGACACACTAGGAACCACGGTGGGGGGGGAGCTTTTCAGTGCCGTGCTTGCAATTTCACAGCTGACATCAGGCAAAGCTTGACAGTGCACGAGACGAATCATCACGAGCCACCAGTAGGACAGACAAATCGCAAGACTAATGCACCTTTTGAGCGTAAGCCGAGAAATAGTCCTAAGCGTTACAATCAGGTGGGCGCGAGCGATTTCCGGGATGCGCTTCACATATCCGGAAGCACGACGGTGTCCCTAAGTCCCGGCGACTCGTTTATGTCCGATCAATCGATGAATTCCATGGAAGATAAAAGAAGTGCAATAGCGAATGCAGAATGCATAGCGTTGAAATGTGAGGAGAAGGGCTGCCAGTTCATTACCGCCTGGGACTCGGAAATGCAAAGACACCTGGCAGAGTGTCATGCACCGGTTACACCGAACAAGTCTCGAAAACCATTGCCAATGTTGATTCCCTTGAGTCCTGCTAAATCGAATAATACTGCCAGTGGATCGTCCACAACACTGTTAAAAGTTCCACGTGTAAGAGTACGGCCGGAACTTGCTCAAATTGCCAGAGACACGGAACTGGCTAAGTTGTATGGGAATAAAGAAGTCAACAACATAAAGAAGGATGCAAATAACGCGGCAGATTTGTTTGAAAAAAAAAATGCGTCCTTCTTTGATAAGCTAAAGGAAAAGCTTACTACATCGGCGTCGATAAATAACGGAGTGGCGGAGGTAGCAGTAAGTACCACGAACGATTTGAAATGCTGGTGTACATTTAAAGCTAGTAGCATGGAGGAGCTGGCTTGTCACAAACAAACACACCACACTGCTCTCAGCGTGTCTGTGGGCACGACGCGTTGCCCAAAGTGCAGAAGACGTTGCAAAAACTCGGCTGATCTACAAGCGCATATGCAGTGTTGTCGCTCGACGAGCAACGATTCGTCCATAGACAGTAGCTTAGAAAAATTATCGAATTGTTCAGAACTACGTGTGACCTCGTATCGCGGTGAATATGCATTCCCAGCGCAAACGGATTGGGACGTAAATCTCAGTGGACTCAATTCTTCTGGATCATCGGTTGAAGGCACCTCAGCGCATCCAAGTGGCCGCCGGGTATTCAAATGCCCGCATTGTCCATTTTGGGCATCCACCGCAAGTCGCTTTCACGTTCATATAGTCGGTCATTTAAATCGGAAGCCATTCGAGTGTTCCCTGTGCGCGTACCGCTCTAACTGGCGGTGGGACATCACAAAACATATTAAACTTAAAGCAGCTAAAGATCCAGTTCATATGACTGCCAGGGTACTTATGACGGATGAAACCGGTCGACGGAATTATTCCAAGTATAACAAGTATCTTGCACAGGTCGAGCAACAATCATGGGACGAGCAAAATATGGAGGAGCGTAGCGTGGAAGAGAGTAATTCCGATGAGCCACCGGCTAAGTTGTTGATTATGAACAGCAACGAGTATTTGCAAGCGCCGGAATGTAGTTCCACTCCGCTCTCGATTGTGTCCACGAGCGAAGGAAGTAATGTTAACACTATCAATATTGGCCTAAGACCACCGCCTCCTCTAAAAGCTGCCGCTCGAAATCGTGGTCAATCCTTGCTAAAAAATAACTTGATCTCACCACACGGACAGAGTGGATCCACTTCCACTACGCTCTCCATAGACAATAAACGTACCATGTGGAAATGTAAACGTTGTAACTTCAGACATTCGAACAGAGAGACCGTATCGTTGCACGTCAAGTCCCACAATGAATCGGAGCAACGCAACGAAGACGAGAAAAATCCATTCGGTTGCGGAGATTGCCCATTTTCCGCCCCAGACGCTGCAACTTTATCGGTACATAGAGTCCATCATCGGCCCAACTTGGAAGCTATTTTCAAATGCTATCTGTGCCCCTATTACGTCAGCACGAAAGCGGAACTTTTGGATCATGTTAGGCTCCACGGCGAGGAGCTCGCGGTCGTGCACCAACAGAGTACGGACTATAATCTTTCATCGAGTAAATATAAAGGGCAACAGGCTAATTCCGATAACAGTAACAATCGTATGAAACAGGACAGGTCTATGGAACAGGTAATCCACATAACCACGCAGAACAACGTGACCTGCATATCGAACGCCTCGAAGAACGCCAATGCACCGCCGCCATTGCTGTTGGATACGCGATCACTGCCAGACCCGCCGTTGGTCTGGGTGTCTAGACCAGACGGCACCCTTGTGAAGTTGTTGAAATGCCGTCATTGTCCTTACGTGTCTTCTAGACTCACTGAGGTCCGTGATCACGAGACCATGCACGTCGACACTCCCAGTGAAGGGCCCGTGATCGCTTGCACGGACTGCAGCTTTACCTGTACCCGTCGAGAAATTATGGTCGCCCACACGGAAATGCATTCCGGGTCGTTGGGTACCGTTCACTGTTTGGTGGACAACACCAGACCCGACTCACAGCAACTGAGCGACCTGACCACGCTTCTTGGATTTGCACATACTCCCGCGTTAGGTTCGGAGCCCGATCTGCGCGACTCCAGATTGGTGAATTGTTGCAGCAAATGCCCGGCACGGTTCCTCTACGAGAAAGAACTGAGAATCCATTTGCGGTACCATTGCACAGAGTTAGCGTACTCGTGCCAATGGTGTTCGTACGCCGCTCGCCAGCAGGCTCATCTGTCGGCCCATCAGAAAGCGCACTCAACGGAATATCAGGAGCGTACGAAGGAGCTATTGTCTCTGTACGGTTACTCCCAGCGATACCCACCTCCCACCACGGCTTGCGTCGAAGCAAGCAGCCAGGATTCGAGCAATCAGAGTTGCACGGTCGCGTGGATCGTCGTCGAGATCTCCGAGACCACGGACAACGGCTCCAACAATGTCGGCAATCCGAATCAACCGAGGACCGGGAATCAAGTGTTCACCTGTGCCAAATGTCCTGCCCGTTACTTTAAGTTAGACGCTTTGGAGTACCACATGACGCTGCACGGATCGAACAACAGATTCAAGTGCACCGAGTGCGACTACTCCTCTAAGACTGCCCAGAATCTGGTGAAACACCAAGTGGTTCACCGGCGACAGAACGAGACCAGCGAGATATCCGCGAATCTGTCGCCGCCGGCCTCCGACCCTCAGTTTGGGCTGTTCATGCGAGGCAACCCGAACTTCGTCTATCCCGGTTACCTGAGAAACGGCATACTGAAAGAGAAACGGTATAAATGCCACAAGTGTCCCTCCGCGTTCGAGAAACGGGAACAGTACAGGGTTCATCTGACGTTGCACGGCGCGAAACAGAGATACCGTTGCTACAGCTGCGACTATTCCGTGAAATATTACGCGAATTATATGCAGCATGTGAAGAAGCACCAGGCGAACGCGGAGGCTCAAGCCTCGCGCCGGCAATTCGAGGACGACACGATCATCATCGACAGCGACACCGTCTCCGACAACGTGGCGTCCGTGTCCCGTTCGGGGAAGACTCTCAAGTCGTCCTGCAGCTCGTCGGCCACGGTGTCCTTGAACGGTACCGCGATGCTAAACTACGGCGGCATGCAAGCCTCCAATCAGGACAAACAGTCGTTGATACTGATGCAGAAAAAGGGCATACTCGTGTCGCATAACGACGAGACTGAGACGTTACGCTGCCAGAGCTGTCCCTTCTCGTCCAGCGACAAAGACGCCATGGACTCTCATAAACGCCGCCACGGTATAGACCGTGTGACACCGTCCTGCCCCCATTGCGATTACAGACCGAGGAAAGATGAGAATATTGGCGAACATATCAGGCTGCATTTCACTAGACTTTACAAGCCTGAGTCCTATCTAATCATAGAGTTTTTAACGTTAACGATGAAGAAACCATCCAACAATGGAAAGGAGGAGAAACAGAAGTCGACGGAACTGTTGTTTAAAGAATATCAAGACGGAAGATTCTTCCCCCTTAACGATAACAATTCGTTCGGCAACAGTTCGACCGTAAATAGCTGTAAGGAGAAAGTTTTAGTGGATCCCAATACCGGAGAAACGAAACATTTAAACGTTTAA
Protein Sequence: MSGRLPRVRALRPRPQQSKLKEGNLKEDLKETAMEEQQSRTSAEELSFEEKDDDDSAKDSLKGEQDGLVDCTGSSQSYECRTCKPPKPLPILKAYLDHLKKEHKQKGKFARDAGNRCSMCPYVALNSRDLETHQRVHHLKRRFFRCSKCSYVTHVRARYTKHVKYHSMPMIKCDACDFRTPYKWNLDRHTRNHGGGGAFQCRACNFTADIRQSLTVHETNHHEPPVGQTNRKTNAPFERKPRNSPKRYNQVGASDFRDALHISGSTTVSLSPGDSFMSDQSMNSMEDKRSAIANAECIALKCEEKGCQFITAWDSEMQRHLAECHAPVTPNKSRKPLPMLIPLSPAKSNNTASGSSTTLLKVPRVRVRPELAQIARDTELAKLYGNKEVNNIKKDANNAADLFEKKNASFFDKLKEKLTTSASINNGVAEVAVSTTNDLKCWCTFKASSMEELACHKQTHHTALSVSVGTTRCPKCRRRCKNSADLQAHMQCCRSTSNDSSIDSSLEKLSNCSELRVTSYRGEYAFPAQTDWDVNLSGLNSSGSSVEGTSAHPSGRRVFKCPHCPFWASTASRFHVHIVGHLNRKPFECSLCAYRSNWRWDITKHIKLKAAKDPVHMTARVLMTDETGRRNYSKYNKYLAQVEQQSWDEQNMEERSVEESNSDEPPAKLLIMNSNEYLQAPECSSTPLSIVSTSEGSNVNTINIGLRPPPPLKAAARNRGQSLLKNNLISPHGQSGSTSTTLSIDNKRTMWKCKRCNFRHSNRETVSLHVKSHNESEQRNEDEKNPFGCGDCPFSAPDAATLSVHRVHHRPNLEAIFKCYLCPYYVSTKAELLDHVRLHGEELAVVHQQSTDYNLSSSKYKGQQANSDNSNNRMKQDRSMEQVIHITTQNNVTCISNASKNANAPPPLLLDTRSLPDPPLVWVSRPDGTLVKLLKCRHCPYVSSRLTEVRDHETMHVDTPSEGPVIACTDCSFTCTRREIMVAHTEMHSGSLGTVHCLVDNTRPDSQQLSDLTTLLGFAHTPALGSEPDLRDSRLVNCCSKCPARFLYEKELRIHLRYHCTELAYSCQWCSYAARQQAHLSAHQKAHSTEYQERTKELLSLYGYSQRYPPPTTACVEASSQDSSNQSCTVAWIVVEISETTDNGSNNVGNPNQPRTGNQVFTCAKCPARYFKLDALEYHMTLHGSNNRFKCTECDYSSKTAQNLVKHQVVHRRQNETSEISANLSPPASDPQFGLFMRGNPNFVYPGYLRNGILKEKRYKCHKCPSAFEKREQYRVHLTLHGAKQRYRCYSCDYSVKYYANYMQHVKKHQANAEAQASRRQFEDDTIIIDSDTVSDNVASVSRSGKTLKSSCSSSATVSLNGTAMLNYGGMQASNQDKQSLILMQKKGILVSHNDETETLRCQSCPFSSSDKDAMDSHKRRHGIDRVTPSCPHCDYRPRKDENIGEHIRLHFTRLYKPESYLIIEFLTLTMKKPSNNGKEEKQKSTELLFKEYQDGRFFPLNDNNSFGNSSTVNSCKEKVLVDPNTGETKHLNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00762862;
90% Identity: iTF_00966313;
80% Identity: -