Basic Information

Insect: Halictus rubicundus
Gene Symbol: -
Assembly: GCA_028454235.1
Location: CM052183.1:11770462-11781808[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00034 0.028 14.8 0.7 2 19 470 487 469 491 0.89

2 17 3.2e-05 0.0026 18.1 4.2 1 23 497 519 497 519 0.98

3 17 0.00031 0.025 15.0 0.1 3 23 527 548 525 548 0.94

4 17 0.39 32 5.2 1.8 1 23 555 578 555 578 0.98

5 17 8.6e-05 0.007 16.7 0.7 1 23 582 604 582 604 0.97

6 17 0.0022 0.18 12.3 0.5 1 23 610 632 610 632 0.98

7 17 0.00017 0.014 15.8 2.3 1 23 638 660 638 660 0.96

8 17 0.0026 0.21 12.1 0.1 1 17 665 681 665 682 0.90

9 17 1.7 1.4e+02 3.2 2.1 1 23 1252 1275 1252 1275 0.97

10 17 8.1e-06 0.00066 20.0 0.1 1 23 1281 1303 1281 1303 0.97

11 17 0.014 1.1 9.8 1.8 1 23 1309 1331 1309 1331 0.98

12 17 2.8e-05 0.0023 18.3 0.3 3 23 1339 1359 1337 1359 0.96

13 17 0.17 14 6.3 1.0 2 23 1366 1388 1365 1388 0.95

14 17 0.00092 0.075 13.5 3.5 1 23 1392 1414 1392 1414 0.98

15 17 0.07 5.7 7.6 1.3 1 23 1419 1441 1419 1441 0.98

16 17 3.9e-08 3.1e-06 27.3 0.4 1 23 1447 1469 1447 1469 0.98

17 17 5e-05 0.0041 17.4 2.5 1 21 1474 1494 1474 1495 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00034	0.028	14.8	0.7	2	19	470	487	469	491	0.89
2	17	3.2e-05	0.0026	18.1	4.2	1	23	497	519	497	519	0.98
3	17	0.00031	0.025	15.0	0.1	3	23	527	548	525	548	0.94
4	17	0.39	32	5.2	1.8	1	23	555	578	555	578	0.98
5	17	8.6e-05	0.007	16.7	0.7	1	23	582	604	582	604	0.97
6	17	0.0022	0.18	12.3	0.5	1	23	610	632	610	632	0.98
7	17	0.00017	0.014	15.8	2.3	1	23	638	660	638	660	0.96
8	17	0.0026	0.21	12.1	0.1	1	17	665	681	665	682	0.90
9	17	1.7	1.4e+02	3.2	2.1	1	23	1252	1275	1252	1275	0.97
10	17	8.1e-06	0.00066	20.0	0.1	1	23	1281	1303	1281	1303	0.97
11	17	0.014	1.1	9.8	1.8	1	23	1309	1331	1309	1331	0.98
12	17	2.8e-05	0.0023	18.3	0.3	3	23	1339	1359	1337	1359	0.96
13	17	0.17	14	6.3	1.0	2	23	1366	1388	1365	1388	0.95
14	17	0.00092	0.075	13.5	3.5	1	23	1392	1414	1392	1414	0.98
15	17	0.07	5.7	7.6	1.3	1	23	1419	1441	1419	1441	0.98
16	17	3.9e-08	3.1e-06	27.3	0.4	1	23	1447	1469	1447	1469	0.98
17	17	5e-05	0.0041	17.4	2.5	1	21	1474	1494	1474	1495	0.94

Sequence Information

Coding Sequence: ATGGAGCTGGGGGAGGGAGAGGCGCAGATTTGTCGACTTTGCGGCCAGTACGAGAGCATATATATCGACGTGTTCAGCGAGGAAGGCACCAAGAGACTTTTAGGCCTGAAAATCCATTCGAAAATCAACATTCTGATAGATGAGAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAGTGTCTGGGCAAGCTCGAATTCGTTTGCGACTTCCAAGAGGAGTGTCTTCGCACCCAACAAGTGTTACGCGATCGATACAATCTACCACCCTTAACAGAGATTGCAGAAGTAAAGACTGAAGAAACAGCACCAAGCACATCGACAAACAATAACAACAACGACATCGACAAAAATCTTAATCCTCCAGCCAAGGAAAGTATAGCACAGCGCGTTTCGAAAACGACACCGAAGACTCAGAGAAATTTACGAAGTCAACATCAAGCGAACAgtcacactaatggtagcagtagcagcagcagtaacagtaatagtaacagtaatggtaacaataatggtaacagtaTCGGTACCGAAGTTGCTAAAGGTCAAACCACTGCTGAGAGCATAACGGAGGATAATATAGACAGTATCGAAGTTGTTCAGAGCGCCGAAACAACGCCTACGAGATGGCTCAGAAGCAGGCAAAACACAGAAATTATTTTGACGAATGAAATAACAACCGATAGACCGATCGCGAATAGGCTTAGAAGTCATTGTAATACCGCAGAGATAAGCGTGAGTAGTCCTCGCAGTAATGTCAGCGAGACCAGTGGTAAACAACAAGATCCGAACACCATACAAATCCCAACGTCAGCTTTGAACAAACTTCTGACCATCGTGTCGAACTCGCCGAACATAGAAGTGTCCGCAAAGGAATCGAAAAACCAAAGCAACGACACGGAAGATATCAGTTTCACGGTCGAATTGTGTAAGAAAGAGAGCGACGACGTTGCCACGGTACGAGCCAGAGTATTTCCAGACCAAGGTTCGTGTTTGGTAGACGAGTCTATCGTTGGTCTTCTACAGAATCAAAGTTGCGTGGAGGTAAACAGTATAATAAATACTATCATCAGCAGCAGTCTAAAGAATGGTAATTCGGCAAAGTCAAAGGATTCGGCCGAATTCGAGCAAAAATGGCAGGCTTCTCAGAACCCGGAAGAACTGTTCAAGATCGACGGAGAGGAGATTCGCGTGGACGACAATATGGAACACATCGTAACGGATAATCAAAATGGTTACTCGTGCAAGCTGTGCTGTAAATTCTACGAGCGCAAAGACAAATGTATGGTCCACGTGAAGACGCATCTGGGGATTAAACAGTACACGTGTATTCTATGCAACGCGAAATTCGTATGCAAGTCCGACGTGATGAAACATATACGGTGCTCGCATACCAATCCCAGACCGATACAGTGTCCAAAATGTCCAAAGAGGTTCAAATCGAAGTTTTACCTAATGGAGCACGACAACGTGCACAAAGGCGTGAGGCCGTACTCTTGCACGGATTGCGGTCAGAGTTACCATCACAAAGTATCGTTGCAGATACACATGAAATCGCATTTACCCCCGCAGAACTTGGCTTGCGAGTATTGCGGTAAAGTGTTTCCGTATCGTACGAGGCTGTTGAGTCATATCGCCAGCGTTCACTTGAAAAATCGTCGGAACTTCAGGTGCCGGTTTTGCTACAATCTCTATTCGAGTCTTTCGGTTTTAAACGAACACATTAAAACGCGTCACGCGACTACCTACACTTGCGAGGTGTGCAGCAAAACGTTTAAAGTCGCGTCGAAATACAAGGCTCACGTGTTGCAGCACACCAACCCTAAGCCTTTCGTGTGCAACGTCTGTAACAATAGATACGCGTCGAAAGCATTCCTGAACGAGCATCTACTGAAACACGAGGGGCTGAGGAAACATATTTGCCAAAAGTGTGGCGCGAGATTCGCCCAAGCTAGTCACTTGGCCGCGCATCGGCACGTGCACGGCGAAAAGAAGCACGCTTGTCCGGAATGCGGGCGAAAATTTAACAGACGCGACAACATGAAGATCAAAGAGAACGACGGATTGCCACACGTTGTTTGCTTGCGGTGCATAGGCGCGTTGGAGTTCTTGTGCGACTTTTACAGTTGTTGTCAGCACACACAAACGAAACTCTCATTGTCGGAGGATGCTAGTGAATACTCGTCGGAGAATTCCCCCAGAAGAATATCGCAGCACGAAAATGACGCCGAATCTAACAAGGAGAATGTCCTGCCATCCTCAAACGAAACCAAACGAAGAAGCAAAGTTTCATCGCCCGGCAAGAAGGACCGGTCTACGAACGATGCTCGGCCCAACGCGCAAACGATTCTGCAAGGAAATACACTGGACGATAGAAAACAATCGGCGACGAACAATGCGATTGTTCAGGAGCAAAAGTCGAAGGGCGAACAAATAAGTAACGACAACGCTTTAGCATGCGGAAGTCCGATGTCGATAAAGGATATCTCGAAGAAAGGGATCGTTCGCGCCAATGGGTCGGAATTCTTGAACAGCTGTGTATTTTCAATGAAGAAAGGCGAAGCAAACGATAAAATAGCTTTAGCACAACCAAAAGGCCGCGTAAGAGGCCGAAAAACTCAGTTACAGAAACTGAGAGAAGCTGGTTTATCCTTAAATATAAAAAGAGAATCTCAGAAAGGTTCGGATGAGACGGAACGCGACGGGAATAATTCACGCAAGAGACGGTGTCTGGGTACAATTTGCACGAACGGTACATCGAATGTAACCAAGAACGCTGTGACCTTGACCAAGCCGCAAATCGAACTACCATTGGAGAATAAAATAGCAACGATATCGTCGAATAAACGCTACATTAAAAATGATGATGCGAATAACGGTTTCATCGGTGGCATAGCGGAGGTGAATTTGAAGGACAAATCTTTAAACGTGGAAACAAAAGAGGACAGCTTCACGAAAAGCAAAGCAATATCTGTAATTGTGAAGCAAGAGAAAGTAGAAGTAGAAGCAATTTCTCAGGAATCTGGAAAGCCGAACCAACTTGTTTGGATTCCAAACGAGATACTGACAGAGGGACGAACAATTGGTATTACAATCGACCAGGATCAAGACATCGATCTGGATTTGTCGTTACGGTTGAATCCCGAACGGGAGGATGATAGGAAAAATTCGGAAGTCGCCGTCACCACTCATACCGATTCAAACGATTCCAACGATTCGAACGATTCAAACGATTCGAACGATTCAAACGATTCGAACGGTTCAAACTACTCAAACGATTCAAACGATTCCAACGATTCCGAGCAGCCGAAAACGAATCTACTGTCCGTAAAACAAACTCGTGCGACCGTTATAAGATCGTCGCGAGAAAGTTCTGTATCGGTAGTCGTTAAATCGGACGTAATCAACAATGTCGACGGTATCGAGGTTACCGACGGTATTGACAGTACCAAAAATGATTCTAAATGCGATTTACAGTCTTCCCGAGGTCTTCAGGACCGGAGCTCGAGTACGTCCGAGGAAAGTAAGAACAAAGATCGATCGTTTGCTAAGATTTCCGAATTGATAAGTGAAGAACAAAAAGAGGAAATCGAGTCTTACTATAGAATTGATATGTCTATCGTTAACTCGGAAGAAGTACAAAAAAATTTGACGGTAGTTGATAAGAAGAACATTCGTTGCAACATCTGCGGAAGTCTTTATCTTCGGATGGACAAGTGTCAGGTACATATTTGGGGCCATTTGCAGATGAAACCGTTTCAATGCAAAGCATGCAACTTTGCTACGGTAACAGTTAGCAACGTTCGTTGCCATATCAGGAAAAGTCATTTAAAGATCAAACCGTTTGCGTGTGATCTTTGCGGAAAGAGATACGTCACTGCCGGATTGTTGGAGCAACATATGAATAGCCACACAGGAGCCCGTCCATTTAAGTGTAAGATTTGCGATTTTGCAAGCTCGACTCGACAAATGCTAAGTTATCACAGCAGTACTCACAAACCGATCAAGGACATCAATTGTAAAATTTGCGGCGCAGAATTCTACTCGAGAAGCAAATTACGCACGCACATGATCGTTCACAAGGGAGATAAAGTCGTCGTGTGTAAACTATGTTCCGCTCATTTATCAAACGCGGAAGCATTGGAAACACACCACAAAAACCTTCACATGCAGGACTATGTCTGCAACGTTTGCGGCAAACACATGAAATCGAAAAAAGCTTTGCACAATCATCAAAACGTACATTCTACGGGAAAGTACAAGTGTACTTTATGTACAAATGTGTACAAGAGCAGTCAAATACTAAAGGAACATCTCTTGAAGCACGAAGGAATTAGAAAATACAAGTGCAATGTTTGCGGCAAGACGTTCGGGCAACAGTCTCACTTGGCTGCTCATATGGCGGTGCACAGCGGGGTTAGATTTCATTGTCCTGGATGCGACAAATCTTTCAACCGACACGACAACATGAAGATACACACGAAACGGTGTAAACCGTTTCTCGCAAATCCAGAACTAAAGAACCTTTTGATAAAAAAGGAAAGGAGTTCGTCGATTAGCAAAGTAATCAAGTCAACCGAAGATACAACCAGTAAGGATTCTTCGTCATTGAATTTCGAAAGTTTCTTCGAGAAACAGACTGCCGACAACGAAGAGATATCGATAAAGACTGTAGACGACAAAGAAGAGACTGCAATGAAATTAGGGTTGAATATCTCTTGCATCGAATCTCCGGATAATATGTGGACTTGCGATAACGTGAGGTATCAGGAGACTTGGGATCGGGAAGTTTCCAATCGCTTCTCGATGGAAGCGTGGCTAGAATCGATAGTCTCTGCACGCGCGCAAATTCCATTACGGCAGTGCCGAACAGTACAAAGCAGTAATATTAAAGAGTACGCGATATCACAAAACTAG
Protein Sequence: MELGEGEAQICRLCGQYESIYIDVFSEEGTKRLLGLKIHSKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDRYNLPPLTEIAEVKTEETAPSTSTNNNNNDIDKNLNPPAKESIAQRVSKTTPKTQRNLRSQHQANSHTNGSSSSSSNSNSNSNGNNNGNSIGTEVAKGQTTAESITEDNIDSIEVVQSAETTPTRWLRSRQNTEIILTNEITTDRPIANRLRSHCNTAEISVSSPRSNVSETSGKQQDPNTIQIPTSALNKLLTIVSNSPNIEVSAKESKNQSNDTEDISFTVELCKKESDDVATVRARVFPDQGSCLVDESIVGLLQNQSCVEVNSIINTIISSSLKNGNSAKSKDSAEFEQKWQASQNPEELFKIDGEEIRVDDNMEHIVTDNQNGYSCKLCCKFYERKDKCMVHVKTHLGIKQYTCILCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLMEHDNVHKGVRPYSCTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPYRTRLLSHIASVHLKNRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCEVCSKTFKVASKYKAHVLQHTNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGARFAQASHLAAHRHVHGEKKHACPECGRKFNRRDNMKIKENDGLPHVVCLRCIGALEFLCDFYSCCQHTQTKLSLSEDASEYSSENSPRRISQHENDAESNKENVLPSSNETKRRSKVSSPGKKDRSTNDARPNAQTILQGNTLDDRKQSATNNAIVQEQKSKGEQISNDNALACGSPMSIKDISKKGIVRANGSEFLNSCVFSMKKGEANDKIALAQPKGRVRGRKTQLQKLREAGLSLNIKRESQKGSDETERDGNNSRKRRCLGTICTNGTSNVTKNAVTLTKPQIELPLENKIATISSNKRYIKNDDANNGFIGGIAEVNLKDKSLNVETKEDSFTKSKAISVIVKQEKVEVEAISQESGKPNQLVWIPNEILTEGRTIGITIDQDQDIDLDLSLRLNPEREDDRKNSEVAVTTHTDSNDSNDSNDSNDSNDSNDSNGSNYSNDSNDSNDSEQPKTNLLSVKQTRATVIRSSRESSVSVVVKSDVINNVDGIEVTDGIDSTKNDSKCDLQSSRGLQDRSSSTSEESKNKDRSFAKISELISEEQKEEIESYYRIDMSIVNSEEVQKNLTVVDKKNIRCNICGSLYLRMDKCQVHIWGHLQMKPFQCKACNFATVTVSNVRCHIRKSHLKIKPFACDLCGKRYVTAGLLEQHMNSHTGARPFKCKICDFASSTRQMLSYHSSTHKPIKDINCKICGAEFYSRSKLRTHMIVHKGDKVVVCKLCSAHLSNAEALETHHKNLHMQDYVCNVCGKHMKSKKALHNHQNVHSTGKYKCTLCTNVYKSSQILKEHLLKHEGIRKYKCNVCGKTFGQQSHLAAHMAVHSGVRFHCPGCDKSFNRHDNMKIHTKRCKPFLANPELKNLLIKKERSSSISKVIKSTEDTTSKDSSSLNFESFFEKQTADNEEISIKTVDDKEETAMKLGLNISCIESPDNMWTCDNVRYQETWDREVSNRFSMEAWLESIVSARAQIPLRQCRTVQSSNIKEYAISQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00863429;
90% Identity: iTF_00762711;
80% Identity: -