Hqua009404.1
Basic Information
- Insect
- Halictus quadricinctus
- Gene Symbol
- -
- Assembly
- GCA_028454245.1
- Location
- CM052128.1:8777158-8788347[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00038 0.031 14.8 0.7 2 19 469 486 468 490 0.89 2 17 3.6e-05 0.0029 18.1 4.2 1 23 496 518 496 518 0.98 3 17 0.00034 0.028 15.0 0.1 3 23 526 547 524 547 0.94 4 17 0.43 35 5.2 1.8 1 23 554 577 554 577 0.98 5 17 9.5e-05 0.0077 16.7 0.7 1 23 581 603 581 603 0.97 6 17 0.0024 0.19 12.3 0.5 1 23 609 631 609 631 0.98 7 17 0.00018 0.015 15.8 2.3 1 23 637 659 637 659 0.96 8 17 0.0029 0.23 12.1 0.1 1 17 664 680 664 681 0.90 9 17 1.9 1.6e+02 3.2 2.1 1 23 1243 1266 1243 1266 0.97 10 17 8.9e-06 0.00072 20.0 0.1 1 23 1272 1294 1272 1294 0.97 11 17 0.016 1.3 9.8 1.8 1 23 1300 1322 1300 1322 0.98 12 17 3.1e-05 0.0025 18.3 0.3 3 23 1330 1350 1328 1350 0.96 13 17 0.32 26 5.6 0.3 2 23 1357 1379 1356 1379 0.95 14 17 0.001 0.082 13.5 3.5 1 23 1383 1405 1383 1405 0.98 15 17 0.078 6.3 7.6 1.3 1 23 1410 1432 1410 1432 0.98 16 17 4.3e-08 3.5e-06 27.3 0.4 1 23 1438 1460 1438 1460 0.98 17 17 5.6e-05 0.0045 17.5 2.5 1 21 1465 1485 1465 1486 0.94
Sequence Information
- Coding Sequence
- ATGGAGCTGGGGGAGGGAGAGGCGCAGATTTGTCGACTTTGCGGCCAGTACGAGAGCATATATATCGACGTGTTCAGCGAGGAAGGCACCAAGAGACTTTTAGGCATGAAAATCCATTCGAAAATCAACATTCTGATAGATGAGAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAGTGTCTGGGCAAGCTCGAATTCGTTTGCGACTTCCAAGAGGAGTGTCTTCGCACCCAACAAGTGTTACGCGATCGATACAATCTACCACCCTTAACAGAGATTGCAGAAGTAAAGACTGAAGAAACAGCACCAAGCACATCGACAAACAATAACAACAACGACATCGACAAAAATCTTAATCCTCCAGCCAAGGAAAGTGTAGCACAGCGCGTTTCGAAAACGACAGCGAAGACTCAGAGAAATTTACGAAGTCAACATCAAGCGAACAGTCACAGTAATGGTAGCAGTAGCAGCAGCAGTAACAATAATAGTAACAGTAACAATAATGGTAACAGTATCGGTACCGAAGTTGCTAAAGGTCAAACCACTGCTGAAAGCATAACAGAGGATAATACAGACAGTATCGAAGTTGTTCAGAGCGCCGAAACAACGCCTACGAGATGGCTCAGAAGCAGGCAAAACACAGAAATTATTTTGACGAATGAAACAACAACCGATAGACCGATCGCGAATAGGCTTAGGAGTCATTGCAATACCGCTGCAGAGATAAGCGTGAGTAGTCCTCGCAGTAATGTCAGCGAGACCAGTGGTAAACAACAAGATCCGAACACCATACAAATTCCAACGTCAGCTTTGAACAAACTTCTGACCATCGTGTCGAACTCGCCGAACATAGAAGTGTCCGCAAAGGAATCGAAAAACCAAAGCAACGACACGGAAGATATCAGTTTCACGGTCGAATTATGTAAGAAAGAGAGCGACGACGTTGCCACGGTACGAGCCAGAGTATTTCCAGACCAAGGTTCGTGTTTGGTAGACGAGTCTATCGTTGGTCTTCTACAGAATCAAAGTTGCGTAGAGGTAAACAGTATAATAAACACTATCATCAGCAGCAGTCTAAAGAATGGTAATTCGGCAAAGTCAAAAGATTCGGCCGAATTCGAGCAAAAATGGCAGGCTTCTCAGAACCCGGAAGAACTGTTCAAGATCGACGGAGAGGAGATTCGCGTGGACGACAATATGGAACACATCGTAACGGATAATCAAAATGGTTACTCGTGCAAGCTGTGCTGTAAATTCTACGAGCGCAAAGACAAATGTATGGTCCACGTGAAGACGCATCTGGGGATTAAACAGTACACGTGTATTCTATGCAACGCGAAATTCGTATGCAAGTCCGACGTGATGAAACATATACGGTGCTCGCATACCAATCCTAGACCGATACAGTGTCCAAAATGTCCAAAGAGGTTCAAATCGAAGTTTTACCTAATGGAGCACGACAACGTGCACAAAGGCGTGAGGCCGTACTCTTGCACGGATTGCGGTCAGAGTTACCATCACAAAGTATCGTTGCAGATACATATGAAATCGCATTTACCCCCGCAGAACTTGGCTTGCGAGTATTGCGGTAAAGTGTTTCCGTATCGTACGAGACTGTTGAGTCATATCGCCAGCGTTCACTTGAAAAATCGTCGGAACTTCAGGTGCCGGTTTTGCTACAATCTCTATTCGAGTCTTTCGGTTTTAAACGAACACATTAAAACGCGTCACGCGACTACCTACACTTGCGAGGTGTGCAGCAAAACGTTTAAAGTCGCGTCGAAATACAAGGCTCACGTGTTGCAGCACACCAACCCTAAGCCTTTCGTGTGCAACGTCTGTAACAATAGATACGCGTCGAAAGCATTCCTGAACGAGCATCTACTGAAACACGAGGGGCTGAGGAAACATATTTGCCAAAAGTGTGGCGCGAGATTCGCCCAAGCTAGTCACTTGGCCGCGCATCGGCACGTGCACGGCGAAAAGAAGCACGCTTGTCCGGAATGCGGGCGAAAATTTAACAGACGCGACAACATGAAGATAAAGGAGAACGATGGATTGCCGCACGTTGTTTGCTTGCGGTGCATAGGCGCGTTGGAGTTCTTGTGCGACTTTTACAGTTGTTGTCAGCACACACAAACGAAACTCTCCTTGTCGGAGGATGTTAGTGAATACTCGTCGGAGAATACACCTAGAAGAATATCGCAGCACGAAAATGACGCCGAATCTAACAAGGAGAATGTCCTGCCATCCTCAAACGAAACCAAACGCAGAAGCAAAGTTTCATCGCCCGGCAAGAAGGACCGGTCTACGAACGATGCTCGGCCCGACGCGCAAACGATTTTGCAAGGAAATACACTGGACGATAGAAAACAGTCGGCTACGAACAATGCGATTGTTCAGGAGCGGAAGTCGAAGGGCGAACAAATAAGTAACGACAACGCTTTAGCATGCGGAAGTCCGATGTCGATAAAGGATATCTCGAAGAAAGGGATCGTTCGCGCCAATGGGTCGGAATTCTTGAACAGCTGTGTATTTTCAATGAAGAAAGGCGAAGCAAACGATAAAATAGCTTTAGCACAACCAAAAGGCCGCGTAAGAGGCCGAAAAACTCAGTTACAGAAATTGAGAGAAACTGATTTATCCTTAAATATAAAAAGAGGATCTCGGAAAGGTTCGGATGAAATGGAACGCGACGGGAATAATTCACGTAAGAGACAGTGTCTGGGTACAATTTGCACGAACGGTACACCGAATGTAACCAAGAACGCTGTGATCTTGACCAAGCCCCAAATCGAATTACCATTGGAGAATAAAATAGCAACGATATCGTCGAGTAAACGCAACGTTAAAAATGATGATGCGAATAACGGTTTCATTGGTGGCATAGCGGAGGTGAATTTGAAGGACAAATCTTTAAACGTGGAAAGAAAAGAGGACAGCTTCACGAAAAGCAAAGCAATATCTGTAATCGTGAAGCAAGAGAAAGTAGAAGTAGAAGCAATTTCTCAAGAATCTGGAAAGCCGAACCAACTGGTTTGGATTCCAAACGAGATACTGACAGAGGGACGAACAATTGATACCACGATCGACCAGGATCAAGAAATCGATCTGGATTTGTCGTTACGGTTGAGTCCCGAACAGGAGGATGATAGGGAAAATTCGGAAGTTACCACTCGTACCGATTCAAACGATTCAAACGATTCGAACGATTCAAACGATTCGAACGGTTCAAACTACTCAAACGATTCAAACGATTCAGACGATTCCGAGCAGCCGAAAACGAATCTACTGTCCGTAAAACAAACTCGTGCGACCGTTATAAGATCGTCGCGAGAAAGTTCTGTATCGGTAGTCGTTAAATCGGACGTAACCAACAATATCGACGGTATCGACATTACCGACGGTATTGACAGTACCAAAAATGATTCTAAATGCGATTTACAGTTTTCCCAAGGTATTCAGGACCGGAGCTCGAGTACGTCCGAGGAAAGTAAAAACAAAGATCGATCGTTTGCTAAGATTTCCGAATTGATAAGCGAAGAACAAAAAGAAGAAATCGAGTCTTACTATAGAATTGATATGTCTATCGTTAACTCGGAAGAAGTACAAAAAAATTTGACGGTAATTGATAAGAAGAACATTCGTTGCAACATCTGCGGAAGTCTTTATCTTCGGATGGACAAGTGTCAGGTACATATTTGGGGCCATTTGCAGATGAAACCGTTTCAATGCAAAGCATGCAACTTTGCTACGGTAACAGTTAGCAACGTTCGTTGCCATATCAGAAAAAGTCATTTAAAGATCAAACCGTTTGCGTGTGATCTTTGCGGAAAGAGATACGTCACTGCCGGATTATTGGAGCAACATATGAATAGCCACACAGGAGCCCGTCCATTTAAGTGTAAGATTTGCGATTTTGCAAGCTCGACTCGACAAATGTTAAGTTATCACAGCAGTACTCACAAACCGATCAAGGACATCAATTGTAAAATTTGCGGCGCAGAATTCTATTCGAGAAGCAAATTACGCACGCACATGATCGTTCACAAGAGAGATAAAGTCGTCGTGTGTAAATTATGTTCCGCTTATTTATCAAACGCGGAAGCATTGGAAACACACCACAAAAACCTTCACATGCAAGACTATGTCTGTAACGTTTGCGGCAAACACATGAAATCGAAAAAAGCTTTGCACAATCATCAAAACGTACATTCTACGGGAAAGTACAAGTGTACTTTATGTACAAATGTGTACAAGAGCAGTCAAATACTAAAGGAACATCTCTTGAAGCACGAAGGAATTAGAAAATACAAGTGCAATGTTTGCGGCAAGACGTTCGGGCAACAGTCTCACTTGGCTGCTCATATGGCGGTGCACAGCGGGGTTAGATTTCATTGTCCTGGATGCGACAAATCTTTCAACCGACACGACAACATGAAGATACACACGAAACGATGCAAACCGTTTCTCGCAAATCCAGAACTAAAGAATCTTTTGATAAAAAAAGAGAGGAGTTCGTCGATTAGCAAAGTAATCAAGTCAACCGAAGATACAACCAGTAAGGATTCTTCGTCATTGAATTTCGAAAGTTTCTTCGAGAAACAGACTGCCGACAACGAAGAGATATCGATAAAGACTGTAGACGACAAAGAAGAGACTGCAATGAAATTAGGGTTGAATATCTCTTGCATCGAATCTCCGGATAATATGTGGACTTGCGATAACGTGAGGTATCAGGAGACTTGGGATCGAGAAGTTTCCAATCGCTTCTCGATGGAAGCGTGGCTAGAATCGATAGTCTCTGCACGCGTGCAAATTCCATTACGGCAGTGCCGAACAGTACAAAGCATTAATGTTAAAGAGTACGCGATATCACAAAACTAG
- Protein Sequence
- MELGEGEAQICRLCGQYESIYIDVFSEEGTKRLLGMKIHSKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDRYNLPPLTEIAEVKTEETAPSTSTNNNNNDIDKNLNPPAKESVAQRVSKTTAKTQRNLRSQHQANSHSNGSSSSSSNNNSNSNNNGNSIGTEVAKGQTTAESITEDNTDSIEVVQSAETTPTRWLRSRQNTEIILTNETTTDRPIANRLRSHCNTAAEISVSSPRSNVSETSGKQQDPNTIQIPTSALNKLLTIVSNSPNIEVSAKESKNQSNDTEDISFTVELCKKESDDVATVRARVFPDQGSCLVDESIVGLLQNQSCVEVNSIINTIISSSLKNGNSAKSKDSAEFEQKWQASQNPEELFKIDGEEIRVDDNMEHIVTDNQNGYSCKLCCKFYERKDKCMVHVKTHLGIKQYTCILCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLMEHDNVHKGVRPYSCTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPYRTRLLSHIASVHLKNRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCEVCSKTFKVASKYKAHVLQHTNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGARFAQASHLAAHRHVHGEKKHACPECGRKFNRRDNMKIKENDGLPHVVCLRCIGALEFLCDFYSCCQHTQTKLSLSEDVSEYSSENTPRRISQHENDAESNKENVLPSSNETKRRSKVSSPGKKDRSTNDARPDAQTILQGNTLDDRKQSATNNAIVQERKSKGEQISNDNALACGSPMSIKDISKKGIVRANGSEFLNSCVFSMKKGEANDKIALAQPKGRVRGRKTQLQKLRETDLSLNIKRGSRKGSDEMERDGNNSRKRQCLGTICTNGTPNVTKNAVILTKPQIELPLENKIATISSSKRNVKNDDANNGFIGGIAEVNLKDKSLNVERKEDSFTKSKAISVIVKQEKVEVEAISQESGKPNQLVWIPNEILTEGRTIDTTIDQDQEIDLDLSLRLSPEQEDDRENSEVTTRTDSNDSNDSNDSNDSNGSNYSNDSNDSDDSEQPKTNLLSVKQTRATVIRSSRESSVSVVVKSDVTNNIDGIDITDGIDSTKNDSKCDLQFSQGIQDRSSSTSEESKNKDRSFAKISELISEEQKEEIESYYRIDMSIVNSEEVQKNLTVIDKKNIRCNICGSLYLRMDKCQVHIWGHLQMKPFQCKACNFATVTVSNVRCHIRKSHLKIKPFACDLCGKRYVTAGLLEQHMNSHTGARPFKCKICDFASSTRQMLSYHSSTHKPIKDINCKICGAEFYSRSKLRTHMIVHKRDKVVVCKLCSAYLSNAEALETHHKNLHMQDYVCNVCGKHMKSKKALHNHQNVHSTGKYKCTLCTNVYKSSQILKEHLLKHEGIRKYKCNVCGKTFGQQSHLAAHMAVHSGVRFHCPGCDKSFNRHDNMKIHTKRCKPFLANPELKNLLIKKERSSSISKVIKSTEDTTSKDSSSLNFESFFEKQTADNEEISIKTVDDKEETAMKLGLNISCIESPDNMWTCDNVRYQETWDREVSNRFSMEAWLESIVSARVQIPLRQCRTVQSINVKEYAISQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00863429;
- 90% Identity
- iTF_00763382;
- 80% Identity
- -