Hrub010797.1
Basic Information
- Insect
- Halictus rubicundus
- Gene Symbol
- Lztr1
- Assembly
- GCA_028454235.1
- Location
- CM052169.1:5896961-5900220[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.8e-14 2.4e-11 43.7 0.0 4 106 357 488 354 492 0.76 2 4 4.6 1.1e+03 -0.3 0.0 76 109 490 523 484 524 0.83 3 4 2.7e-18 6.6e-16 58.4 0.0 9 96 584 671 577 684 0.83 4 4 0.98 2.4e+02 1.9 0.0 76 102 685 711 680 718 0.80
Sequence Information
- Coding Sequence
- ATGAACAACGTTGCGTCTGTAGAGTGCTTGACCCTCGAATTCGGACGTTTTGAAACCGTCCATCGATGGCAACGAATGTTAGAATGCGACGAATTTGTTGGTGCCAGGCGTAGCAAACACACTGTTGTAGCGTACAAAGATGCAATCTATGTTTTTGGAGGTGACAATGGTGAGAAAATGTTGAATGATTTGTTGCGATTCGATGTCAAAGAAAAATCCTGGGGTCGAGCACCGGCTGCAGGAGCCCGTCCTGCACCACGCTATCATCATTCAGCAGTGGTTCATGATTCTTCTATGTTTGTATTCGGTGGTTACACCGGGGACATACATTCCAATTCGAATCTTACCAACAAGAATGACTTGTTCGAATACCAATTCCAAACTTGCCAATGGATAGAATGGGAATATATGAAGAAACCACCGCCACCGGTAGCCAGATCTGCTCATGGGGCAGCAGTATACGACAACAGGTTATGGATATTTGCTGGCTATGATGGCAATCGAAGATTGAATGACATGTGGACCATATCGTTATTGCCTGGTGAGCCAAGAGTATGGGAAGAAGTAGTTCAATCGGGTGATCGTCCTCCTACATGTTGTAATTTCCCAGTAGCGGTAGCTCGCGAGTCGATGTTCGTCTTCAGTGGTCAGAGCGGAGCCAAGATCACTAACAGTCTCTTCCAGTTCCATTTCCGAGAGAGGCGGTGGACTCGGATCTCAACGGATTTTAAACACATTCTACGGGGTGTTCCACCGCCGCCAGCACGACGATATGGTCACACGATGGTCAGTTTCGACCGGCATCTCTATGTGTTCGGCGGTGCAGCCGATTCCACGTTACCAAACGATCTCCACTGCTACGATCTTGACACGCAGACTTGGAGCATCATTCTTCCGACCTCTGACAGTCAAATCCCATCCGGTCGTTTGTTCCATGCAGCAGCGGTAATAGGTGAGGCGATGTTCATATTCGGCGGAACAGTCGACAACAACGTCCGGTCCGGTGAAACATACAGGTTCCAATTTTCTTCCTACCCAAAGTGCACGTTGCATGATGATTTCGGAAGGTTGCTGAGGGGACGTCTCTTCTGCGACGTTGAGTTCATTGTGGGGGCTACAGAGACGAGAATACCGGCTCACATAGCCATGGTAGCGGCGAGGTCAAAGTTCCTCAGGGCTCGCATTAGGGAAGCTCGAGAGAAACGCGAGAAACTGGAAAAGGAGATCAAGGACTCGGATCTGTTAGAGGTGAGGCTGGAGGATGCAGTGCCCGAGGCCTTCGAGATGGTCCTGAATTACATCTACACGGATCGCATTGATCCGACGAGAAGAACCGACGATGAATCGAGCAGTTGCGTCGAAGATCCTCCGAGCAACCGAATTGTGCTCCTTATGATGGACGTATATCGTTTAGCCGACCAGTTCAAAATGGAACGCCTCGAACACTGGTGTGTCTACTACCTCATGTCGACCATAAGTCACGCGAATGTTCTAGAAGCGTTGCACAACGCTGGTCAGTTGCGTCTGATGTTTATCAAGGAGTTTTGCTTGAACTTTGTCATCAAAGAAAGCAACTACAGTCAGATCATAATGAGCAAAGAGTTCGAGACATTGGACCAGCCATTGATGGTGGAGATCATCAGGAGAAGGCAGACGAGCCAGAGAAGGAGCTTCTGCGAGATGTACGATGTTGGCGCAGGTACGACATTGGAACAGGACATGAAGGCATTTCTGAAAGGTGTCGGCTCTGAATTCTGTGATGTAACATTGATGCTGAATGGTACATCCATTCCTGCCCACAAAGCAATCCTTGCCGCAAGATGCAATTACTTTGAGGGTTTGTTCCGTTCCTTTATGCCAGTGAACAAGATGGTGAACATGGAAATAGGCAAAATGATCCCCTCTTCTGATTCTTTCAACTCTCTCATGAGGTACATCTACTACGCGGATGTCTCTATGCCACCAGAAGACTCTGTCTACTTATTCACAGCACAAATTTTCTACGGTTTCACAAACAACCGACTGCAGGCCTTCTGCAAGCAGAATCTTGAAATGAACATCAGCTTTTCGAACGTGATTCAGATCTTGGAGGCTGCCGATAGGATGCAAGCCATTGATGTTAAAAAATACGTGTTGGATCTGATAGTGCACCACTTCACAGAGGTAGCAAGGCTTCCAGAATTAAGACAATTGAGCAAAGAACTATTGTTGGACATTATCGAGGCATTAGCTGATGAACGTTGTGAGGTACGAACCTGTCTGGACATGGTGAACGAGTGCAATTAG
- Protein Sequence
- MNNVASVECLTLEFGRFETVHRWQRMLECDEFVGARRSKHTVVAYKDAIYVFGGDNGEKMLNDLLRFDVKEKSWGRAPAAGARPAPRYHHSAVVHDSSMFVFGGYTGDIHSNSNLTNKNDLFEYQFQTCQWIEWEYMKKPPPPVARSAHGAAVYDNRLWIFAGYDGNRRLNDMWTISLLPGEPRVWEEVVQSGDRPPTCCNFPVAVARESMFVFSGQSGAKITNSLFQFHFRERRWTRISTDFKHILRGVPPPPARRYGHTMVSFDRHLYVFGGAADSTLPNDLHCYDLDTQTWSIILPTSDSQIPSGRLFHAAAVIGEAMFIFGGTVDNNVRSGETYRFQFSSYPKCTLHDDFGRLLRGRLFCDVEFIVGATETRIPAHIAMVAARSKFLRARIREAREKREKLEKEIKDSDLLEVRLEDAVPEAFEMVLNYIYTDRIDPTRRTDDESSSCVEDPPSNRIVLLMMDVYRLADQFKMERLEHWCVYYLMSTISHANVLEALHNAGQLRLMFIKEFCLNFVIKESNYSQIIMSKEFETLDQPLMVEIIRRRQTSQRRSFCEMYDVGAGTTLEQDMKAFLKGVGSEFCDVTLMLNGTSIPAHKAILAARCNYFEGLFRSFMPVNKMVNMEIGKMIPSSDSFNSLMRYIYYADVSMPPEDSVYLFTAQIFYGFTNNRLQAFCKQNLEMNISFSNVIQILEAADRMQAIDVKKYVLDLIVHHFTEVARLPELRQLSKELLLDIIEALADERCEVRTCLDMVNECN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00087267;
- 90% Identity
- iTF_00866086;
- 80% Identity
- -