Hrub016066.1
Basic Information
- Insect
- Halictus rubicundus
- Gene Symbol
- bab1
- Assembly
- GCA_028454235.1
- Location
- CM052181.1:13037689-13040898[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-15 3.3e-12 45.9 0.1 2 45 349 392 348 392 0.93
Sequence Information
- Coding Sequence
- ATGGCGAGCACGTcgcaacaatattgcctgcgttggaacaaccaccgttcgaatctgctgacggtgttcgacgaactgctgcagaacgaagcgttcaccgacgtgaccctggcggtggacggcggtgcttcggtcaagtgtcacaagatggtgttggccgcctgttcctcctactttcaaacgttgttcatcgacctgccgtgcaagcatccgatcgtcgtcctaaaggacgtgaaatattcggagatcaaggcgatcctcgagtacatgtaccgaggcgaagtgaacgtagcgcaggagcaactggcaggccttctcaaggtcgccgaggtgctcaaggtcaagggcctggTAGAAGAGAACGGTTCCTCCTCGCAAGGTCGCCGCGAGGAGGTCGAGACCTCGATGTCTCCTCCACCGGCGATTAGCACGAGCACGACCAGCAGCGTGGCTCACAGCAGCGGTCACACGTCGCCGCCGCACTCCACCGGCTCCTCGTACACCGTCTACGGGAAGTCATCGATGGAAAGGGGCTCGAATCGACTCCCTTTGCACATGTGGCCCCTCTCGGGGATTCCCATTTCCTCTCACGTCGGATCGAACCACCAGGTAGCGCCGCCGCATCTTTCCCAACAATCGATTCTGACTGGATCGTACGATAACGGCTTCGAAACCTCCCCGCTCAAACGGAAAAAGCTCTCGAACATGTTGCTGAACAGGGACACACCGATCCTCAGGACGGTACTCGGCCAGGGACACGCAGACAGCTCGCAAGGCATACCTTTGTTGCACTCGGACAGTCAGGAGAGCAATCACTTCAGGCACACAAGCAGCAACGGCTCGTACCACGAAAACGACAGACGCAACAGTCAGGATATCTCGACACAGGGGGAGCCCGCGCACAGTCCCTACACGGACGTGTCCATGATGGACGAGGACGATAAGCAACCCTCGCCGCAGTCCTATCCCGGGGACGTTAAATCAGGAATCTTGAATTGTGTTCCGACGCCGAAGCCCGAGTGGAAACGGTACAAACAGTACACGCGAAACGACATCCTGTCCGCGATCGAAGCGGTGCGTTCGGGGATGAGCGCGTTGCAGGCAGCACGTAAGTACGGCGTACCATCTCGAACCCTTTACGACAAGGTGAAAAAACTCGGGATCACAACGTCGCGGCCTTTTAAACGCGGCTCGAACGGCAGCGGCGCCTGTTTCCCGTACGGGATCGGCGGCAACGTGAACGGCAGCATATACGGCGGCGCGTTGTCCGAGAATGAGAACGAGAACAGCAACGCGGTCATTGAGAATCCAGGTTCGGTCCTGGAGGCTTACAAAGCCAGGGAGGGTCCCATCGATCGTGAAATGTTAGATATCACCCGGTGCAGTCTCAGCCCCGTTATACACTCCGCGAAACAACAGCAACAACAACAGCAAACCAACGAAGATCAGGTTGAGGATCTTTCGGTGGGTCGTAAGTCCGTGTCGGATGTTCGCGTGATAGTCCCCCCACCTACGTTGGTCAAAGAGGAGGATGGCGTTGGCTCCGATTCCTGTAACCATAACTAA
- Protein Sequence
- MASTSQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLAVDGGASVKCHKMVLAACSSYFQTLFIDLPCKHPIVVLKDVKYSEIKAILEYMYRGEVNVAQEQLAGLLKVAEVLKVKGLVEENGSSSQGRREEVETSMSPPPAISTSTTSSVAHSSGHTSPPHSTGSSYTVYGKSSMERGSNRLPLHMWPLSGIPISSHVGSNHQVAPPHLSQQSILTGSYDNGFETSPLKRKKLSNMLLNRDTPILRTVLGQGHADSSQGIPLLHSDSQESNHFRHTSSNGSYHENDRRNSQDISTQGEPAHSPYTDVSMMDEDDKQPSPQSYPGDVKSGILNCVPTPKPEWKRYKQYTRNDILSAIEAVRSGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSGACFPYGIGGNVNGSIYGGALSENENENSNAVIENPGSVLEAYKAREGPIDREMLDITRCSLSPVIHSAKQQQQQQQTNEDQVEDLSVGRKSVSDVRVIVPPPTLVKEEDGVGSDSCNHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01071088;
- 90% Identity
- iTF_00864729;
- 80% Identity
- iTF_00763317;