Hqua007231.1
Basic Information
- Insect
- Halictus quadricinctus
- Gene Symbol
- -
- Assembly
- GCA_028454245.1
- Location
- JAQQRP010009717.1:1-2657[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2 4.4e+03 -2.5 0.0 28 37 359 370 351 370 0.71 2 2 2.2e-10 8.5e-07 28.6 0.3 15 72 583 639 581 643 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAACATACATTATCGTTCCCTAGTTTTCCGAAACTAAATTCGAACAACTATAATAGTTGGAAGGTGGACATGAAAGTGCTGCTGATCGATCGAGGATCATGGGAATTCATAACGGGAATCACAGAGCCACCAGAAGACAACGCGCCGGGTCGAGAAAAGCGCGACTATCAGAGAAGGAAAGATAAAGCATACACAACGATATATCAAGGTATAGAGAGACAATTTCAAACTCTAATTGCAAACACTCTAGATGGCAGAGAAGCTTGGGAGATTTTAAAAACGAATTTTGAACCAACGTCACGTGCACGTCTAGCTGGTCTTGTAGATGAGTTTTATGATCTAAAATTCAATCAAGATGAAGAGACGATAGGAATATTTTGTCGAAGAGTAAATCAGAAAATGTTATTAATCCAAGAAGCAGGGTTTGAAATTCCAGAAATACTCACATGTTTTCAATTAATAAGAAAATTACCCATCGAATATGATAATCTAGTGCAAACTATTTACAGACTAGATGATAAAGTTTTTACTTTCAAAGAAATAGAAAAGCAGCTGATTACTGAAGAAGGAAGAATAAAACAAAAGAGGAAAGATGAAGGTCTGGACACCGTAATAGATGCCTATCAGACTGGAACAGGGAAAGAAATGAAAAACTTCAGGAGAGAGAACAAAAATACAAATACACGTTTTGGAAATAATGGAAATATAACAACTAAGGTAAGAAATATTCCACAATCCTATGAGAGTAAAAGAAATCAACAATGCAGGTActgtaaaaagcctggacatttgatggaggactgctaTACACTAAGAAGAAAACAACAAAACAATATAACAGGAAATTATCGCGTAGACAAAAGGGCGTTTTACACTGAAACTACTATAGCGATACGAGGTGATAGTGATCACGAGGCACAAGCTGTGGCTATTTCAGAAAAGCCTCTCGATGAATGGTTAATAGACAGCGCAGCCACGTCTCATTTTTGCAAAGAAAGGAGTTGGTTCAGAAATTTCAAAGAATTGCCACCTACTGATATTTTGGTAGGAGATAAAAATGCCAAATCACAAGTCTTAGGGAAAGGAGATATTATATTTTATGCCAGGGATAAAAACAAATTCGTAGAAATAAAGTTGAAGGATGTTCTGTATGCACCGAATATGAGGAGGAATTTGATAAGTGGATCATGCATGGACATAGCAGGTTTTCGCATAAATTGGAAAAACAATAAAATGGTAGTGTACACAGAAGAAAATGAATACTACTTTACAGTTTATAGAAAAGAGAGACTTTATATATTATATGGAAGACATGAAGGAAGAAAAGATGAAACATACATGTCTGGAAGATGCCAAATGGGCAAGATTAATATGAATACGATACATAGGAGACTGTGTCACATAAATAAAAACATTATTAACTACATGGAAAAGAAAAACGTTGTAAGAGGTCTCGAGAAGATAAATGGAGACATGGACTTATGCAACATATGTCAAATAGCAAAGGCAACAAGGAAGATAGTAGAGACAACACATGTAAAGGTTGACGAAAGTAAAAATGGAGTTGAAATGCTATTCGGAAAAGGAAGATTAGATAAGAATTGCAATATTATTATACATGACGAAGAATCAATGTGGGACGATGATACACATGCAGAAGAGGAGAAAACGATGAAACCTGAAAAGGGGATAAAAGAAGAAGTGCCTAACGAAGCATTGAAGTATATTGATATTTCTGAGTGGGAAAGAACTGAAAGGAGAAGGAAAGAAAGAGAAAAGGAAGAAAGAATCGACGTATACTACTGTCCACCCGGAAATAATACAAGATTAAGATCATTGGATGACATTAAAAGATATTGTGCAACAAATAAAATGAGGTTCGATCCAAAACATTTTTCATTTGAACCAAAAGCTAATGATCAAAAAGGGGAAGAAGAAGACAAGAGGGAAATTCACTTGAGCAGGTG
- Protein Sequence
- MEEHTLSFPSFPKLNSNNYNSWKVDMKVLLIDRGSWEFITGITEPPEDNAPGREKRDYQRRKDKAYTTIYQGIERQFQTLIANTLDGREAWEILKTNFEPTSRARLAGLVDEFYDLKFNQDEETIGIFCRRVNQKMLLIQEAGFEIPEILTCFQLIRKLPIEYDNLVQTIYRLDDKVFTFKEIEKQLITEEGRIKQKRKDEGLDTVIDAYQTGTGKEMKNFRRENKNTNTRFGNNGNITTKVRNIPQSYESKRNQQCRYCKKPGHLMEDCYTLRRKQQNNITGNYRVDKRAFYTETTIAIRGDSDHEAQAVAISEKPLDEWLIDSAATSHFCKERSWFRNFKELPPTDILVGDKNAKSQVLGKGDIIFYARDKNKFVEIKLKDVLYAPNMRRNLISGSCMDIAGFRINWKNNKMVVYTEENEYYFTVYRKERLYILYGRHEGRKDETYMSGRCQMGKINMNTIHRRLCHINKNIINYMEKKNVVRGLEKINGDMDLCNICQIAKATRKIVETTHVKVDESKNGVEMLFGKGRLDKNCNIIIHDEESMWDDDTHAEEEKTMKPEKGIKEEVPNEALKYIDISEWERTERRRKEREKEERIDVYYCPPGNNTRLRSLDDIKRYCATNKMRFDPKHFSFEPKANDQKGEEEDKREIHLSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -