Hlab004582.1
Basic Information
- Insect
- Habropoda laboriosa
- Gene Symbol
- SCAND3_1
- Assembly
- GCA_001263275.1
- Location
- NW:297162-299592[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1e-05 0.00058 19.3 1.6 2 23 283 304 282 304 0.97 2 15 0.00058 0.033 13.8 2.2 1 23 310 333 310 333 0.97 3 15 2e-05 0.0011 18.4 1.8 2 23 414 435 413 435 0.97 4 15 4.1e-06 0.00024 20.6 1.8 1 23 441 463 441 463 0.97 5 15 0.00057 0.032 13.8 0.3 1 23 469 491 469 491 0.97 6 15 1.9e-07 1.1e-05 24.8 0.9 1 23 506 528 506 528 0.98 7 15 4.3e-05 0.0024 17.4 0.6 1 23 534 556 534 556 0.92 8 15 6.7e-06 0.00038 19.9 2.2 1 23 562 584 562 584 0.98 9 15 0.00055 0.031 13.9 0.2 1 23 590 612 590 612 0.99 10 15 1.8e-06 0.0001 21.7 0.3 1 23 618 641 618 641 0.94 11 15 1.2e-05 0.0007 19.1 1.3 1 23 647 669 647 669 0.98 12 15 0.00027 0.015 14.9 4.7 1 23 675 697 675 697 0.98 13 15 5.2e-06 0.0003 20.2 0.6 1 23 703 726 703 726 0.96 14 15 0.0018 0.1 12.3 0.4 3 23 734 754 732 754 0.88 15 15 2.4e-06 0.00014 21.3 4.5 1 23 760 782 760 782 0.99
Sequence Information
- Coding Sequence
- ATGAATTCgtattataatattacaaacaAAAGATTGTATTATAGAGGACAAATTGATATAATAGATATGCCAATGCAATTAACTAGCAACTATAAATACTTTCTTGTTTATGAGGATCAAACATCTAGATTTGTTGTATTGAAAGGGTTACATGGAAATACAGCAAATGAAGTAGCTCTAAAATTGTTAGACATATTGGCTATTATTGGAGCACCGCAGGTGTTACAAAGCAATAATGGCCGCAAGTTTGCAAAAGAAGTTGTGCAAGAGTTGCGTCTCTTGTGCAAAGATTTTATAATACTTCACGGAGAAATCTCTCAGAACAAAGAACAGAACAGAGATTTTAAGAATTTACTTGAACGTTGGGTGGAAAAAAACCCAACAAAGACATGGTATGAAGCTGTGAAAtacatacaaatttttcaaaattcaacatttcGTTCTGAGAATGGAAAGATTCCttatgatattttatttggaCGAAATGTACATGAAGATTTCGAGAAACGAATTAATACAATAGATTCAGCAGAAAACATATGGACAGAAGAGGAATGGATTAGTCTCATGTCTAATGGAACAGATAATGTTAAAAAGGAAAGTGATGAACAGCATACAGAAAATTTAACTTTTACAGACAACAGAGATGTGGATAGTGTAAAAGATTGTGAGAGTGACTCTTTCAGTGAGACTAAAGATGATCTCCAAAGAGACACTcctgattttaattttgtggACGTCAAGAGTGAACCACTAATCATGCACACAGAAGATTCAGTATTTGAGGATGATTCTGATATTATAGATGATAAAGCAGTATTAGCTGAGGAGAGTCAGAtcaatttaaaatgtaaagttTGCCAAAAGCAATACATGAAACCTGGTTATCTGAAAAATCACATGAGAACACatttaaaaggaaagaagTTTGAATGTGTTCTGTGTAACAaaacatttcacattttaaGTTGGTATGAGAAACATATGCGGCAGTCTCATAGACAAAGTAAATTATCCAGTTTAAGTAGAAAGAGGAGAAGTAAAGATTCACAAGATGAATCAACGTTAGACACAAAACCATCTAAATTAAGAAGTTTTTCGGATTTAAATCTTAGTGAAACACAATCTAACGAAGCAGATGATTGTCCAAAAACGACAAAAAGTTTAAGTCTCGttaaagagaggaaaaaaatttccacagaTAACCGATCTATGAAAATAAACGGAGATCCAACTTTGAAGTGTTCGTATTGTAatcaaaaattcaactttcCTAGCGTATTAAAAAGGCACGTGCGATCTCACACGAACGAGAGGCCctatatttgtgaaatttgtaaCAAGAGCTTTAAACAATTGGGTCATCTCAGTCAGCATTCGTTAACGCACAAGGATTATCGTTCTTTCCATTGTGCGGTTTGTGGAGTAAAGTTCGAATCATTGGGCTCACTGAAGATCCACGCTCAGTCACACAAGCACGattatatttcgaaaaacAAAGAGGCTTTTCGTTTATTCGAATGTGACAATTGCAAAAAGGTATTTACCACTAAGAGCGTTTTGGAGAGACACATACTCACTCATTCTCACGAGCGTCAATTTGCCTGTATAATTTGCGGGAAAAGATTCAAACAAGCGGGACACGTGAAGTCTCATATGTTGGTGCATACGGGTGAACGAAACTTCGAATGCTCCGTTTGCAAGAAGAGATTCAGCCTTTCGAACTCTCTGAAGAAGCACATGTACGTACACAATGGGGAAAAACCGTATCAATGTGATGTATGTGGTGCACGATTTCTTGAAAAGAGAAACCTAAACGGACATCTTATGACCCACACGAACGAGCGTCCGTTTCAGTGTAAAATTTGTGGAAAGCGATATACTTTGGCAGACACTTTGCGTCGGCACATAAGCGCTGCTCATGAGGATGGACGCACGTATCAATGTGAGATCTGTGCAAAAATGTTCAAGCAGCTTGCTCATTTGTCTGTTCACAAAAAAGTGCACAACGATGAACGACCATTCCAGTGTCACTTGTGCGAAAAGAACTTTAAACATAAAAACGTGTTGAAATCCCACTTAGCCATTCATGCCAATGTGAGGCCATTCGAATGTGACATGTGCAAAGCCACATTTGTGAGGAAAACAAATTTGCAAACGCATATTACATCGGCTCATATGAATGAAAGACCGTACCTGTGTATTATTTGCGGCAAACGATTCAAACAAATTAGTCATTTAAATGGTCACGCGGTAGTGCACAACAATTTAACGCCTTATCAATGCGACTTCTGTGATCGACGATGCAACAGacttgataatttaaaaaaacatatgCGTCTTCATACGAAGAATAAAGAATGA
- Protein Sequence
- MNSYYNITNKRLYYRGQIDIIDMPMQLTSNYKYFLVYEDQTSRFVVLKGLHGNTANEVALKLLDILAIIGAPQVLQSNNGRKFAKEVVQELRLLCKDFIILHGEISQNKEQNRDFKNLLERWVEKNPTKTWYEAVKYIQIFQNSTFRSENGKIPYDILFGRNVHEDFEKRINTIDSAENIWTEEEWISLMSNGTDNVKKESDEQHTENLTFTDNRDVDSVKDCESDSFSETKDDLQRDTPDFNFVDVKSEPLIMHTEDSVFEDDSDIIDDKAVLAEESQINLKCKVCQKQYMKPGYLKNHMRTHLKGKKFECVLCNKTFHILSWYEKHMRQSHRQSKLSSLSRKRRSKDSQDESTLDTKPSKLRSFSDLNLSETQSNEADDCPKTTKSLSLVKERKKISTDNRSMKINGDPTLKCSYCNQKFNFPSVLKRHVRSHTNERPYICEICNKSFKQLGHLSQHSLTHKDYRSFHCAVCGVKFESLGSLKIHAQSHKHDYISKNKEAFRLFECDNCKKVFTTKSVLERHILTHSHERQFACIICGKRFKQAGHVKSHMLVHTGERNFECSVCKKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFQCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDMCKATFVRKTNLQTHITSAHMNERPYLCIICGKRFKQISHLNGHAVVHNNLTPYQCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118145;
- 90% Identity
- -
- 80% Identity
- -