Aplu110836.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anthophora plumipes
Gene Symbol
SCAND3
Assembly
GCA_951804975.1
Location
OX638122.1:16945826-16948251[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.8e-06 0.0009 22.2 1.8 2 23 281 302 280 302 0.97
2 15 0.00025 0.13 15.4 3.2 1 23 308 331 308 331 0.97
3 15 8.4e-06 0.0042 20.1 1.8 2 23 412 433 411 433 0.97
4 15 5.8e-06 0.0029 20.6 1.8 1 23 439 461 439 461 0.97
5 15 0.00085 0.43 13.8 1.5 1 23 467 489 467 489 0.97
6 15 7e-05 0.035 17.2 7.3 1 23 504 526 504 526 0.99
7 15 1.6e-08 8.2e-06 28.6 1.1 1 23 532 554 532 554 0.98
8 15 4.8e-06 0.0024 20.8 1.8 1 23 560 582 560 582 0.98
9 15 0.0012 0.62 13.3 0.2 1 23 588 610 588 610 0.99
10 15 9.6e-06 0.0048 19.9 0.8 1 23 616 639 616 639 0.94
11 15 1.7e-05 0.0088 19.1 1.3 1 23 645 667 645 667 0.98
12 15 0.00038 0.19 14.9 4.7 1 23 673 695 673 695 0.98
13 15 4.6e-05 0.023 17.7 0.3 1 23 701 724 701 724 0.96
14 15 0.0025 1.3 12.3 0.4 3 23 732 752 730 752 0.88
15 15 3.4e-06 0.0017 21.3 4.5 1 23 758 780 758 780 0.99

Sequence Information

Coding Sequence
atgaattcatattacaatattacaaataaaagaTTGTATCACAGAGGACAAATTGATGTAATAGATATGCCGGTAAAATTAACTTGCGActataaatacttttttgtaTACGAAGATCAGATATCCAGATTTGTTGTATTGAAAGGATTAAACGGGAATACAGCGAACGAAGTAGCTGTAAAACTTTTAGACATATTTGTTATTATTGGAGCACCACAGGTGTTGCAAAGCAACAATGGCCGCAAATTTGCGAAAGATGTTGTGCAAGAGATACGTCTCTTGTGCAAAGACTTCATAATACTCCACGGAGAAATGTCCGAAAGCAAAGAACCGAGAGATTTTAAGAATTTACTCGAACGTTGGACGGAgaaaaatccgacgaaaacatgGTACGAAGCTGCAAAATACATACAGATCTTTCAAAATTCGACATTTCGTTCCGCGAACGGTAGAATTCCTTACGATATTTTATTCGGACGAAATGTTCACGAAGATTTCGAGAAAGTAACTAATACGATAGATTCGAGAGAGAATATATGGGCAGAAGAGGAATGGAATAGTCTGTTGCCTAACGAAACGCGCATTTTTAAACGGGAAGGTAGCGTACACCTTATAGAAGATTCAACTTTTACAGACAGCAGAGATGTGGATAGCGTGAAAGATTGCGAGAGCGACTCTTTCAGCGAAATCAGAGATGATCTCCAGGGAGACACTCCTGGGTTTAATTTTGTGGATGTTAAGAGTGAAGAGATCTTATACACAGAAGATTCAATGTTTGAGGATGAATCTGATATATTAGATGATAAAGCAGTATTAGCTAAGGAGAGCCAAATCGATTTGAAATGTAAAGTTTGCCAAAAGCAATATACGAAACCGGGTTACTTGAAAAATCACATGAGGACacatttaaaaaggaaaaagttcgAATGTACCATGTGTAACAAAACGTTTCACGTTCTAAGTTTGTATGAGAAACACCTGCGACAGTCTCACAGACAAAGTAAATTATCCAGTTTAAATAGAAAGAGGAGAAGTAAAGATTCGCAGGATGAATCGATGTTAGACGCGAAACCATCTAAATTAAGAAGTTTCTCGTCTTTAAATCGTAGCGAAACTCAATCCAACAAGACAGACGACTGTCCGAAAACGACGAAAAGATTATGTCTTgttaaagagaagagaaagattaCCACAGATAGTCGATCGATGAAAATAAACGGTGATCCAACACTGAAATGTTCGTATTGCAATCAGAAATTCAACTTTCCTAGCGTATTAAAAAGGCACATACGATCTCACACGAATGAGAGACCCTACATTTGTGAAATTTGCAATAAGAGCTTTAAACAATTGGGCCATCTCAGTCAGCATTCGTTAACGCACAGAGATTGTCGTATTTTCCGTTGTGCGATCTGCCATACAAAATTCGAATCGTTGAATTCGCTAAAAACTCATGCTGCGTCGCACAAAGAGAACTACATTTTGAAAACTAATCAAATTTTTCGTTTATACGAGTGTGATCATTGTAAAAAGGTATTTACCACCAAATGCGTTTTAGAGCGACACATACACACTCATTCTCGCGAGCGTCACTTTCCCTGCAAAATCTGTGGGAAAACATTCAAACAAGCGGGACACTTGAAATCTCATATGTTGGTGCACACGGGTGAACGAAACTTCGAATGCTCCATTTGCCAAAAGAGATTCAGCCTTTCGAATTCTCTGAAGAAGCATATGTACGTACACAACGGGCAAAAACCGTATCAATGTGATGTGTGCGGTGCACGATTTCTAGAAAAGAGAAATCTAAACGGTCATCTTCTGACCCACACGAACGAACGTCCGTTCAAGTGTAAACTTTGTGGAAAACGATACACATTGGCAGATACGTTGCGGCGGCACATAAGCGCCACTCACGAAGAAGGACGTACGTATCAATGCGAGATCTGTGCGAAAATGTTCAAGCAACTTGCTCATTTGTCTGTTCACAAAAAAGTGCACAACGACGAACGACCGTTTCAGTGTCATCTGTGCGAGAAGAATTTCAAACATAAGAACGTGTTGAAATCCCATTTGGCCATTCATGCAAATCTAAGGCCGTTCGAATGCGACATATGTAAAGCCACATTTGTAAGGAAAACAAACGTGCAAACGCATATCACATCAGCCCATATGAACGAAAGGCCGTACCTGTGTATTATTTGTGGAAAACGATTCAAACAGATTAGTCATTTAAATGGCCACGCGGTGGTGCACAACAATCTGACGCCTTATCAATGCGACTTTTGTGATCGACGATGCAACAGACTTGACAATTTAAAGAAACATATGCGTCTTCATACGAAGAATAAAGAATGA
Protein Sequence
MNSYYNITNKRLYHRGQIDVIDMPVKLTCDYKYFFVYEDQISRFVVLKGLNGNTANEVAVKLLDIFVIIGAPQVLQSNNGRKFAKDVVQEIRLLCKDFIILHGEMSESKEPRDFKNLLERWTEKNPTKTWYEAAKYIQIFQNSTFRSANGRIPYDILFGRNVHEDFEKVTNTIDSRENIWAEEEWNSLLPNETRIFKREGSVHLIEDSTFTDSRDVDSVKDCESDSFSEIRDDLQGDTPGFNFVDVKSEEILYTEDSMFEDESDILDDKAVLAKESQIDLKCKVCQKQYTKPGYLKNHMRTHLKRKKFECTMCNKTFHVLSLYEKHLRQSHRQSKLSSLNRKRRSKDSQDESMLDAKPSKLRSFSSLNRSETQSNKTDDCPKTTKRLCLVKEKRKITTDSRSMKINGDPTLKCSYCNQKFNFPSVLKRHIRSHTNERPYICEICNKSFKQLGHLSQHSLTHRDCRIFRCAICHTKFESLNSLKTHAASHKENYILKTNQIFRLYECDHCKKVFTTKCVLERHIHTHSRERHFPCKICGKTFKQAGHLKSHMLVHTGERNFECSICQKRFSLSNSLKKHMYVHNGQKPYQCDVCGARFLEKRNLNGHLLTHTNERPFKCKLCGKRYTLADTLRRHISATHEEGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANLRPFECDICKATFVRKTNVQTHITSAHMNERPYLCIICGKRFKQISHLNGHAVVHNNLTPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00761112;
90% Identity
-
80% Identity
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