Hlab000317.1
Basic Information
- Insect
- Habropoda laboriosa
- Gene Symbol
- bab2
- Assembly
- GCA_001263275.1
- Location
- NW:3077614-3092850[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.1e-13 7.5e-10 37.5 0.0 1 39 421 460 421 464 0.90 2 4 1.9e-12 2.3e-09 36.0 0.1 2 39 476 513 475 516 0.94 3 4 6.9e-19 8.4e-16 56.6 0.0 2 45 531 575 530 575 0.97 4 4 7.9e-19 9.5e-16 56.4 0.1 1 42 582 624 582 625 0.97
Sequence Information
- Coding Sequence
- ATGGAGACGGATCGTTATTGGGGCGTGCACTACAGCGGCGGCATGGCCGGGCAGCACTACTGCCTGCGCTGGAACAACTACCAATCAAACATGACGTCCGTTTTCCATCAGCTCCTCCAGACGGAATCTTTCGTGGACGTCACCCTGGCCTGCAACGAGGCTTCCTTAAAAGCACACAAGGTGGTGTTATCGGCGTGCAGTTCCTACTTTCAAAAGCTTCTGCTCTCGAATCCCTGCAAACATCCGACGATCATTATGCCCCAAGACGTCTGTTTCAATGATCTCAAATTCATCATAGAATTTGTCTACAAAGGAGAGATCGACGTTTCCCAGGCAGAGCTACAGTCCCTGCTGAAAACAGCCGATCAGCTGAAGATCAAAGGACTCTGCGAGGTGCCGGAAAGCAGAGACGGTCCACCATCGGTGAGTCTTAGTTCACCGCCGAGAGAACCTGGCACTCCTAGGATAAATTTTACGAAGCTGAAGAGGCATCATCCGAGATACAAGAGGGCAAGGACAACGTTCGAGCCTCGCGCGACCGACTCCAGGCACTACGACCGTTACAAAGAGGAGGAATCGAACGAGGACTATAACCTGGAGAACAAAGAGAACCACAGAGACTGGCAACCCGAAGATGAAGAGTGCACGGAGGCAACCACGGGACCAGTAGTCTTGGAAACTTGGCAACGTAACGCCAACAGCACCGGCATCGCCACCACTaccgccaccaccaccaccactaccACGACCACCACCACCGCTACCAGCAACAATAGTAATAACAACAGTAGCGGAAACAGCAACGGTAACAGCACgaacaacaataataacaacGGTGACATGTTCTGTCATACAGGCCTCGGTCATTACGGTCATCATCCGGATCCCGGGGAGGTTGATCTACCTCCAGAAACTCAACCTACACCACCGAGTGCCACATTGGTCGGTACCACCATCACCCATCTAAGAGACCCGGATCATCACTCTACAGAGATTCAGAATTGCGACAGTGTAAAGATCAAATTCGAAACGTTACACACGATGGATTCCTCAGACACGATCGACATCGACAGCCACATGTCGGACCGGGCAAGTGTCAGTTCGAAGAATGCGGCCGACAGCGACAACATGATGATGATCACGCCTGAATTGTTGGGATTAATGCCTTCTGGGAGTTCCATTCACTCGGATTCCGGTGAGAACAACTCGAGGGGTCATTCTGGACAGTCGAGCTCTCATCATCATGGCTCGAAATCGTGGACTCAGGAGGATATGGACGCCGCTTTGGAAGCTCTGCGAAATCACGATATGAGCCTTACGAAAGCTTCCGCTACCTTCGGTATACCATCGACGACATTGTGGCAAAGGGCGCATCGACTGGGCATCGACACCCCGAAAAAGGACGGACCCACCAAGTCGTGGAGCGACGAGAGTTTAAATAACGCGCTCGAAGCGTTACGAACAGGAACGATATCGGCTAACAAAGCATCGAAAGCGTTCGGTATACCATCCAGCACACTTTATAAAATCGCGAGGAGGGAAGGCATCAGACTAGCTGCACCTTTCAACGCCAGTCCTACCACTTGGTCGCCCGCCGATCTCGATCGCGCCCTCGAAGCGATACGCTCCGGTCAAACGTCCGTGCAAAGAGCGTCCACGGAATTCGGTATACCCACAGGAACGTTGTACGGTCGATGTAAAAGGGAGGGAATCGAACTTAGCCGAAGTAATCCTACACCCTGGAGCGAAGATGCTATGACCGAAGCTCTCGAAGCTGTCAGATTAGGCCATATGAGCATCAATCAAGCGGCCATCCACTATAATTTACCGTACTCCTCTTTGTACGGTCGTTTCAAGAGGGGAAAATACGAGGAACCGGCGGTCGGCGATCTATCACAAGACGGTAGCAGTCCTCACTTCCATCAAAGTCCGAGTCAGAATCATTCGTCCGCCGTTCCAGATCAAATGCCCTACCAAGGCAGCTGA
- Protein Sequence
- METDRYWGVHYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTESFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHPRYKRARTTFEPRATDSRHYDRYKEEESNEDYNLENKENHRDWQPEDEECTEATTGPVVLETWQRNANSTGIATTTATTTTTTTTTTTATSNNSNNNSSGNSNGNSTNNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDLSQDGSSPHFHQSPSQNHSSAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00391429;
- 80% Identity
- iTF_00761065;