Gvir003874.1
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- pol
- Assembly
- GCA_956483585.1
- Location
- OY101440.1:59102038-59115432[-]
Transcription Factor Domain
- TF Family
- IRF
- Domain
- IRF domain
- PFAM
- PF00605
- TF Group
- Helix-turn-helix
- Description
- This family of transcription factors are important in the regulation of interferons in response to infection by virus and in the regulation of interferon-inducible genes. Three of the five conserved tryptophan residues bind to DNA.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00035 15 7.2 0.0 20 72 26 80 18 84 0.88 2 3 0.00037 15 7.1 0.0 20 72 467 521 460 525 0.88 3 3 0.00037 15 7.1 0.0 20 72 908 962 901 966 0.88
Sequence Information
- Coding Sequence
- ATGCCCTTTGGATTGAAGAATGCACCTTCAATTTTCCAACGGGAAAAGGGAATTCATAGCACAACGGAACAAAATTACAGCACCAATGAAAAAGAACTTTTGGCCATAATTTGGGCCTTACAAAAACTAAGGAATTACATATACGGCATATCCGACCTCACTATTTTTACGGACCATCAGTCATTAACTTATGTTTTTTCGGAAAAGAATCCCAACCCTAAGTTAAAACGCTGGAAAGCTATCATAGAAGACTACGGCgctaaaatacaatacaaaccAGGCACTGAAAATGTAGTAGCCGATGCATTGTCTCGTCAGACTATAACTGCATCCTCAATTGACACTACACATTCAGCTGAAAGTTCAAGTAGTGATATCATCAAAGCAGCTACCCAACCATATAACTCATGCATGACAGCGCACGCCATGGAAGATGCGGTGCGAACATTCAAGAATGGAATCAATAATGACTTCATACGTTCCACGTTATATGGAAACCCCATCAAGGACCTCGAACATGCCTATGCCATAGCTCTGACTATTGAACATGACAATAGCCACAGAAATATTCAACATGGCTATCCACACCGTGAAGAAAATAGGCAGCATAAGACTGGAACACACCAGAAGGAACAAAAGCAAcaaccatacaaaaataatcaacATTATAGACGACCATCCTATCAACATCAACGCCAAAGAGATAAACAGTATGAAAAGGAAATAGAAAGATTAATgcaggaaaataataaaataggttCTTTACCTTTTACAACAACAATAGAGGCAAGTATTAGGACAACCACTAAAGAACCCATATGGACAAAGCAATATCCATGTAATATGAATGATATTGAGTTCATTAATAAAGTAATAGAAAACTTATTAAGTGATGGCATAATTCAAAGAAGCTACAGCCCACATAACTCACCTATGTTGACAGTACATAAGAAGGGTGTAGACGAAAATGGTAAACCCAAAAGAAGAATGGTAATAGATTTCcaCCCGGAGAAGATAAAGGCAATTGAAAATTTCCCTATACCCAAAACTTTGAAAGATCTTCGTAGTTTTTTGGGATTAACAGGATACTATAGACGTTTTGTGAACGATTATGCCCACGTCGCAAAACCACTAACAATACATTTGAAAGGCGAGAACGcatatattggaaaaaataaaagcaagaaTAAAGCAATTCAGTTAGACCAAGCTGCCATAGAAACAATACAAAAGctgaaaatcaaattaaaagagCAAGTTGAATTATTTCAACCTGATTATATTAAATCATTTGAACTTACCACGGACGCTTCCAACATAGCTATTGGAGCTGTGCTAAGTCAGAACAAAAAACCAATATATTTCCTGTCTCGTACACTTAGCACAACGGAACAAAATTACAGCACCAATGAAAAAGAACTTTTGGCCATAATTTGGGCCTTACAAAAACTAAGGAATTACATATACGGCATATCCGACCTCACTATTTTTACGGACCATCAGTCATTAACTTATGTTTTTTCGGAAAAGAATCCCAACCCTAAGTTAAAACGCTGGAAAGCTATCATAGAAGACTACGGCgctaaaatacaatacaaaccAGGCACTGAAAATGTAGTAGCCGATGCATTGTCTCGTCAGACTATAACTGCATCCTCAATTGACACTACACATTCAGCTGAAAGTTCAAGTAGTGATATCATCAAAGCAGCTACCCAACCATATAACTCATGCATGACAGCGCACGCCATGGAAGATGCGGTGCGAACATTCAAGAATGGAATCAATAATGACTTCATACGTTCCACGTTATATGGAAACCCCATCAAGGACCTCGAACATGCCTATGCCATAGCTCTGACTATTGAACATGACAATAGCCACAGAAATATTCAACATGGCTATCCACACCGTGAAGAAAATAGGCAGCATAAGACTGGAACACACCAGAAGGAACAAAAGCAAcaaccatacaaaaataatcaacATTATAGACGACCATCCTATCAACATCAACGCCAAAGAGATAAACAGTATGAAAAGGAAATAGAAAGATTAATgcaggaaaataataaaataggttCTTTACCTTTTACAACAACAATAGAGGCAAGTATTAGGACAACCACTAAAGAACCCATATGGACAAAGCAATATCCATGTAATATGAATGATATTGAGTTCATTAATAAAGTAATAGAAAACTTATTAAGTGATGGCATAATTCAAAGAAGCTACAGCCCACATAACTCACCTATGTTGACAGTACATAAGAAGGGTGTAGACGAAAATGGTAAACCCAAAAGAAGAATGGTAATAGATTTCcaCCCGGAGAAGATAAAGGCAATTGAAAATTTCCCTATACCCAAAACTTTGAAAGATCTTCGTAGTTTTTTGGGATTAACAGGATACTATAGACGTTTTGTGAACGATTATGCCCACGTCGCAAAACCACTAACAATACATTTGAAAGGCGAGAACGcatatattggaaaaaataaaagcaagaaTAAAGCAATTCAGTTAGACCAAGCTGCCATAGAAACAATACAAAAGctgaaaatcaaattaaaagagCAAGTTGAATTATTTCAACCTGATTATATTAAATCATTTGAACTTACCACGGACGCTTCCAACATAGCTATTGGAGCTGTGCTAAGTCAGAACAAAAAACCAATATATTTCCTGTCTCGTACACTTAGCACAACGGAACAAAATTACAGCACCAATGAAAAAGAACTTTTGGCCATAATTTGGGCCTTACAAAAACTAAGGAATTACATATACGGCATATCCGACCTCACTATTTTTACGGACCATCAGTCATTAACTTATGTTTTTTCGGAAAAGAATCCCAACCCTAAGTTAAAACGCTGGAAAGCTATCATAGAAGACTACGGCgctaaaatacaatacaaaccAGGCACTGAAAATGTAGTAGCCGATGCATTGTCTCGTCAGACTATAACTGCATCCTCAATTGACACTACACATTCAGCTGAAAGTTCAAGTAGTGATATCATCAAAGCAGCTACCCAACCATATAACTCGTATGGTATTCAAAAACGCCAGTACATAGATCAGCAGCAAACGGACAAGTGGAAAGAGCGCATAACACAATCAGCGAATTAA
- Protein Sequence
- MPFGLKNAPSIFQREKGIHSTTEQNYSTNEKELLAIIWALQKLRNYIYGISDLTIFTDHQSLTYVFSEKNPNPKLKRWKAIIEDYGAKIQYKPGTENVVADALSRQTITASSIDTTHSAESSSSDIIKAATQPYNSCMTAHAMEDAVRTFKNGINNDFIRSTLYGNPIKDLEHAYAIALTIEHDNSHRNIQHGYPHREENRQHKTGTHQKEQKQQPYKNNQHYRRPSYQHQRQRDKQYEKEIERLMQENNKIGSLPFTTTIEASIRTTTKEPIWTKQYPCNMNDIEFINKVIENLLSDGIIQRSYSPHNSPMLTVHKKGVDENGKPKRRMVIDFHPEKIKAIENFPIPKTLKDLRSFLGLTGYYRRFVNDYAHVAKPLTIHLKGENAYIGKNKSKNKAIQLDQAAIETIQKLKIKLKEQVELFQPDYIKSFELTTDASNIAIGAVLSQNKKPIYFLSRTLSTTEQNYSTNEKELLAIIWALQKLRNYIYGISDLTIFTDHQSLTYVFSEKNPNPKLKRWKAIIEDYGAKIQYKPGTENVVADALSRQTITASSIDTTHSAESSSSDIIKAATQPYNSCMTAHAMEDAVRTFKNGINNDFIRSTLYGNPIKDLEHAYAIALTIEHDNSHRNIQHGYPHREENRQHKTGTHQKEQKQQPYKNNQHYRRPSYQHQRQRDKQYEKEIERLMQENNKIGSLPFTTTIEASIRTTTKEPIWTKQYPCNMNDIEFINKVIENLLSDGIIQRSYSPHNSPMLTVHKKGVDENGKPKRRMVIDFHPEKIKAIENFPIPKTLKDLRSFLGLTGYYRRFVNDYAHVAKPLTIHLKGENAYIGKNKSKNKAIQLDQAAIETIQKLKIKLKEQVELFQPDYIKSFELTTDASNIAIGAVLSQNKKPIYFLSRTLSTTEQNYSTNEKELLAIIWALQKLRNYIYGISDLTIFTDHQSLTYVFSEKNPNPKLKRWKAIIEDYGAKIQYKPGTENVVADALSRQTITASSIDTTHSAESSSSDIIKAATQPYNSYGIQKRQYIDQQQTDKWKERITQSAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -