Gvir023965.1
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- bab2
- Assembly
- GCA_956483585.1
- Location
- OY101442.1:120401919-120405914[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-17 5.9e-14 52.7 0.0 1 43 56 99 56 101 0.95
Sequence Information
- Coding Sequence
- ATGATTGAAAGCGGACATCCTTGGATGGGTGGCGCATCAACCTCATCGGTTACAGACAGCTATCAATATCAATTGCAGTCGATGTGGCAAAAATGTTGGAATACTAATCAGCAAAATCTTGTACAACAACTGAGATTTCGTGAGCGCGGCCCATTAAAATCCTGGCGTCCTGAAGCCATGGCAGAAGCCATTTTCAGCGTACTGAAAGAGGGTTTATCGTTGTCACAGGCAGCCAGAAAATTTGATATTCCATATCCCACATTTGTTTTGTATGCAAATCGTGTGCATAATATGCTGGGACCCTCTTTAGATGGCGGCTCGGATCCACGTCCCAAGGCAAGAGGGCGGCCGCAAAGAATATTGTTGGGCATGTGGCCGGAGGACTTAATACGTTCGGTCATAAAAGCGGTGGTCTTTAGGGATTATCGTGAATTAAAGGATGAAATGGGAGGCCTACCGTTTGCCAATGGCGGCCAGCCACATCCGGCTATTTTTGGCAGTTCCCCTAGTGGCTCGGCAGTTTCAAATGGATTTCATAATGCTGCCAAGCTGGCAGCACAAAATACTGGTCTTGGACAAGAGTCAACCAGTCCGCTGTCAACAATGACTGAAAATTTACGCCGGCAAATTATGTCACAGCAGCAGCAGTCGCCAATATCCCAATCGATGAACATGTACAAGTCACCTTCGTATGTGCAACGATCGGAAATAGATGATCAAATATCCGGTGTAGCTTCAAAACAACATACCGAAAGACGGGGCTCAGAAAATCTGCCAGATCTAAGTGCTTTGGGTCTAATGGGCTTGCCCGGACTAAATGTGATTCCTACCGGAGCGGCACGCAATAGCCAAATGCACTCGAATACGGCAGCCTTTTCGCGCGAGCGAGAGCGCGAACGTGAAAGAGATAGAGAACGCGAGCGAGAACGTGAACGAAATCGTGATAGGGAGCGAGAACGTGAAAGGGATAGAGAAAGACAATATAGCAATCAATCTCGCGGCTCGGCCGGCGGTGAATCACAAAAGTCAGCGGATTCTGCTTcgccttattcacaaatgaaaatgaaagaTCATCCTAATTATGCCTATAACAAACGTTTTCTGGACAGCTTGCCGCCCGGCATAGATTTTGAGGCCATAGCGAACGGTTTGTTGCAAAAGTCCACCAATAAAAGTCCGCGCTTTGAAGACTTCTTTCAAGCTCAGGACATGAACGATCTAATGGCCGCCCCTGAGTCAGCAAGTGCACCACACTTTCCCCCCCAAAGAGAAAGTAATCTTATGAAAATCAAATTGGAACATCAGCCCACAGAGCTGCAGCATGAGGATTGA
- Protein Sequence
- MIESGHPWMGGASTSSVTDSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSLDGGSDPRPKARGRPQRILLGMWPEDLIRSVIKAVVFRDYRELKDEMGGLPFANGGQPHPAIFGSSPSGSAVSNGFHNAAKLAAQNTGLGQESTSPLSTMTENLRRQIMSQQQQSPISQSMNMYKSPSYVQRSEIDDQISGVASKQHTERRGSENLPDLSALGLMGLPGLNVIPTGAARNSQMHSNTAAFSRERERERERDRERERERERNRDRERERERDRERQYSNQSRGSAGGESQKSADSASPYSQMKMKDHPNYAYNKRFLDSLPPGIDFEAIANGLLQKSTNKSPRFEDFFQAQDMNDLMAAPESASAPHFPPQRESNLMKIKLEHQPTELQHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00370896;
- 90% Identity
- iTF_00199793; iTF_01397345; iTF_01174147; iTF_01398408; iTF_01201524; iTF_01399380; iTF_00899462; iTF_01427398; iTF_00655246; iTF_01376558; iTF_00741775; iTF_01109268; iTF_00435445; iTF_00900505; iTF_01074393; iTF_01137920;
- 80% Identity
- -