Gvir009601.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gymnocheta viridis
Gene Symbol
Runx1
Assembly
GCA_956483585.1
Location
OY101441.1:6637513-6671185[-]

Transcription Factor Domain

TF Family
Runt
Domain
Runt domain
PFAM
PF00853
TF Group
Beta-Scaffold Factors
Description
The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia [1]. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene [1]. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction.In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5 4.2e+04 -7.8 6.6 51 73 14 36 9 44 0.77
2 2 6.7e-73 5.6e-69 230.9 0.0 3 129 86 212 84 212 0.98

Sequence Information

Coding Sequence
ATGCATCTCACTACTACAACAACAAATGGCTCGGCCAATACCAACATTACGGCCACagccaacaataacaataataacagccagaataacaacaacaacaatagttCGTCAAACACAAACTCCAACAATAATTCATCGAAtggcaacaataacaacaacagcacagaacaaaatactCCGCCCACAGCAGCACAACTACTCAATGAGGCCTACACAAAAATGACTTCGGACATTTTGGCCGAACGCACACTTGGCGATTTTCTCACCGAACATCCGGGCGAACTCATACGCACCAGCAGTCCGCTGTTCGTTTGCACAGTCTTACCGCCACATTGGCGTTCGAACAAGACACTGCCGGTGGCATTCAAAGTTGTTTCTTTAGGCGACATCATGGATGGTACAATGGTGACGGTGCGAGCGGGCAATGATGAAAACTATTGTGCTGAATTGAGAAATTCGACGGCGGTGATGAAGAATCAAGTGGCCAAATTTAATGATCTACGTTTTGTGGGACGCAGTGGTAGAGGGAAAAGCTTTACATTGACAATCACAGTTTCAACAAATCCGCCCCATATTGCCACCTACAATAAGGCCATTAAAGTGACAGTCGATGGACCCCGGGAACCACGTTCGAAAACCAGACAACAGCAACAATTTCATTTTGCTTTCGGCCAGAGACCTTTTCATTTTTCAACGGATCCACTGTCCGGTTTTCGTATGCCACCAATTGGCAACTGTCAAAGTGCCAGCAACACGCACTGGGGTTATGGTTCAGCAACCGCCTATTCACCCTACTTAGCCAGCAGTGGCCTGTCATCATGCACAACACCTTCATCAGCCCAATTCAATAATCCAGCGTTGGGATTTTCATGTTCATCGAATGAGCAGGCGAATAATCAAGATTTTACAGGTGCTACAAATAGAGATTGTGTGCCAATGTTACCCGATTCTACGGCCTCAGACTTAGATCAGCATTTAAGTAATTTAGTGGGCTCAACTACCGGCCAGATGTCACATCACAGTTTACTGGGCTCAACCGGTCAAACGGCAATTTCATCGACGGTAAATGGTGGGGCAGTGCCGGGCACAAATTCGATATTGGTGCCTCGTTATCACAACTCCAATAATGATTACAATGTGCATTCTAGTCAAAATGGTCCCCGTAGCTTAAGTGATTCTTCGCAAGCAGAGTCACCGGTGCAGGAGGATTTACTGTCTACAAACACACCAAATTTGGGAGGTACAACTGGGAATGCTGCTGCCAATGGCGGCACGAATAGTAGTTCTAATGGCTCAGCCAATAATTCTTTAGTAGGCACGAATCAGAATTTCAGTGGTATTGTGAATCAAACACAAAATCCGGCAGCTTATGGAGCAGTCACCGGAACTGGGGTGGGTGTGGGTGGTGGTCATGCTGGTTCGGCTGGTGCTGGCTGCAATGGCTCTTTGTATCCTGTCTTGCCGGCCAGTTTATTGTACTCTCAACTTTATACCGCTGCCAATCAAACGCATGGTTTTCATTCGCATGCCTTACCCTCGCATACTTCGCCAAATTCCACAGTCCATGGTGAATTGCAGAGTGTTATGGACCATATCAGCAATGTGGGCGTGAGGCAGCAACATAATATCATGTCCGGTGGTGGTGTTACACATCCTGGAGATTTGACCTTAATAGGCAACTGTGGTGCCTCGGTGAGAAATATCGAAGATGGCAATACCAACCGGCAATTGACTGCTTTGGCTGCTCATCGCGGTCATCATAATCCAGCTGATAATGGGGGTAGTGTTTGGCGGCCATATTGA
Protein Sequence
MHLTTTTTNGSANTNITATANNNNNNSQNNNNNNSSSNTNSNNNSSNGNNNNNSTEQNTPPTAAQLLNEAYTKMTSDILAERTLGDFLTEHPGELIRTSSPLFVCTVLPPHWRSNKTLPVAFKVVSLGDIMDGTMVTVRAGNDENYCAELRNSTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITVSTNPPHIATYNKAIKVTVDGPREPRSKTRQQQQFHFAFGQRPFHFSTDPLSGFRMPPIGNCQSASNTHWGYGSATAYSPYLASSGLSSCTTPSSAQFNNPALGFSCSSNEQANNQDFTGATNRDCVPMLPDSTASDLDQHLSNLVGSTTGQMSHHSLLGSTGQTAISSTVNGGAVPGTNSILVPRYHNSNNDYNVHSSQNGPRSLSDSSQAESPVQEDLLSTNTPNLGGTTGNAAANGGTNSSSNGSANNSLVGTNQNFSGIVNQTQNPAAYGAVTGTGVGVGGGHAGSAGAGCNGSLYPVLPASLLYSQLYTAANQTHGFHSHALPSHTSPNSTVHGELQSVMDHISNVGVRQQHNIMSGGGVTHPGDLTLIGNCGASVRNIEDGNTNRQLTALAAHRGHHNPADNGGSVWRPY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01378158;
90% Identity
iTF_00349949;
80% Identity
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