GBI_11919-RA
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_017312745.1
- Location
- Scaffold97:4683010-4707051[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.1 6.1e+03 -1.9 0.2 21 31 221 231 214 236 0.79 2 9 0.0094 53 4.7 0.0 21 46 277 302 267 308 0.80 3 9 0.00041 2.3 9.0 0.0 20 53 304 337 300 338 0.90 4 9 0.00061 3.5 8.5 0.1 23 44 335 356 328 360 0.87 5 9 0.00015 0.84 10.5 0.1 21 52 361 392 356 394 0.87 6 9 0.001 5.8 7.8 0.1 21 44 389 412 384 416 0.88 7 9 0.00049 2.8 8.8 0.1 21 44 417 440 412 444 0.89 8 9 0.00058 3.3 8.5 0.0 21 44 445 468 440 476 0.85 9 9 0.0002 1.2 10.0 0.1 21 43 473 495 468 500 0.89
Sequence Information
- Coding Sequence
- ATGGATTCTTTTCCTACACCCTTACAATATAATCCCTCAGGCACGGAAAAAGAAGAAGCATGGTGGCGATACTTGGACAAGGAGACATTGAAAAAGGCTAGGCCCAACCTCGTGGCGGACAACAAAGGACGTAATTTACTTGTGAAGATTGATTCCCCTTTCAGTGACCAGAGCTCGGTCATACGAGTTTTTCCCCCGTGGCATTGGCTGCCGCGCTCGGGCATTGCGAGGGTCGCACTGCAGAGCGCCAGCGTGCCACGACCCGCATGCAGCGAACTGCACTGCCCGGCAGAAACGGACTCTGAGAGGGAAGGGGTCTCATTATGTGTTAGTTCTGTTGAAAATGCTGTGGTTGCCATTCCTCCATTGAAGAACATGGGACTAGAAGGCTTGCAAAAAGTATCACCTGTTTGCCCCCACTGTCGGCAAGTTTTTCCTTCGCCATTTCATCTATTAGAACATGCGACAACCTGCACAATGTTGACTGCGCAACAGGCTTGTAAATCAAACTGCTGTTGTCCTCCAAGTGAAGATGCACCGTTACCTTTGAAATTTGATAGACATAGAAGAGAAATATACACCAAGCAATGCATTCATGGGGTTTGTAATTCAGATCTGAACAAACAAGAGGAAATTAAACAAGCAAAGTGTGTTCACAAAGATGAATTGCCATTTTCATGTGTAATATGTGCTCCAGCTGTGAAGTTGCCTCTAGATTTTCAAAAAGATTCTGAAACCGTTGGAAATGAGTCTACATTTGTATGTGAAAAGTGTGGGAAGTGCTGCAAATATTGTAAAAATATTACAAGTCAAAAAAATTCCCAAATCCATGAGCAACCATACCAATGTGATCATTGTGATGCCAATTTTAAACAGTGGGTAGGTTTAAAGAATCACCAATATGTTCACAATAGTGATAAGCCGTATGCATGTGACACGTGTGGGACAAGTTTCAAACAGTCTAGAGTTTTGGAAACTCATAAAAGGATTCATTCTAACGTGAAGCCATATGTATGTGATGTTTGTAATGCAGCATTCAAACAGTCATCACACTTGAAACAACACAAACGAATCCATACAAATGAAACTCCTTATGCTTGTGATATGTGTAGTGCGGCTTTCAAACAATCGGTCCACTTAAAACAACACAGACGTGTTCACACCAATGAAAAACCATATGTATGTGATGTGTGCCCATCAGCTTTCAAGCAGTCTGAACATCTAAAACAACATAAAAGAATTCACACAAATGAAACTCCATATGCGTGTGATATGTGCAGTGCAGCTTTCAAACAGTCTGTTCACCTGAAACAACACAGACGTATTCATACTAATGAAAAACCATATTCATGTGATCTTTGTGGTGCAGCTTTCAAACAGTCAGAACATTTAAAATTGCATAAACGAACCCACACAAACGAGAAACCATATGCATGCGACCTTTGTAGTGCAGCTTTCAAACAGTCAGCTCACTTAAAACAACATAAACGAACTCATGCTCCAGAAAAAGTGATGTCTCAAACATTTTGTCATTTGGAATCACACTAA
- Protein Sequence
- MDSFPTPLQYNPSGTEKEEAWWRYLDKETLKKARPNLVADNKGRNLLVKIDSPFSDQSSVIRVFPPWHWLPRSGIARVALQSASVPRPACSELHCPAETDSEREGVSLCVSSVENAVVAIPPLKNMGLEGLQKVSPVCPHCRQVFPSPFHLLEHATTCTMLTAQQACKSNCCCPPSEDAPLPLKFDRHRREIYTKQCIHGVCNSDLNKQEEIKQAKCVHKDELPFSCVICAPAVKLPLDFQKDSETVGNESTFVCEKCGKCCKYCKNITSQKNSQIHEQPYQCDHCDANFKQWVGLKNHQYVHNSDKPYACDTCGTSFKQSRVLETHKRIHSNVKPYVCDVCNAAFKQSSHLKQHKRIHTNETPYACDMCSAAFKQSVHLKQHRRVHTNEKPYVCDVCPSAFKQSEHLKQHKRIHTNETPYACDMCSAAFKQSVHLKQHRRIHTNEKPYSCDLCGAAFKQSEHLKLHKRTHTNEKPYACDLCSAAFKQSAHLKQHKRTHAPEKVMSQTFCHLESH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00759535;
- 90% Identity
- iTF_00759535;
- 80% Identity
- iTF_00759535;