GBI_13807-RA
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_017312745.1
- Location
- Scaffold130:2981546-3064160[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-113 1.1e-109 367.1 35.7 1 300 199 510 199 510 0.89 2 2 0.14 8.3e+02 -0.3 6.3 120 172 508 560 507 584 0.80
Sequence Information
- Coding Sequence
- ATGATTCCTTTGACTGGATCAAGTTTCACAAATAATAGGAATTTAATCAAGATGAAGATGCATGCAGGGCCGCCGTCCCCGGCGGCCGACTCGTCGCTGGACGACGCGCTGCGCTCCGCAGCCGACGACGGTAGCGAGGACAGCTGCAATTTCGAGGACTGCAGCTCGGGCGACGGGGCGAGGACGGGCGCGGCCAGCCCGGCGTCGACGGCGTCGACGACGGCGTCGGCGGCCGCGTCGCCGGAGAGCGAGTGCGTGAACCCGCTGGTGCGGACGGACAGCGCGGGCAGGGCGAGCGGCGAGGACGGCGACGATGTGTTCGACTCGGCGGCGGAGGGCGAGGCCGACGCGCCCGGGACGCCCTCGACGCCCGTCTCGCCCGCGGGCGAGGCGCGCGGCCGAAGAGGGTCCTCCCTAGGGCGCACGCCACCCATCCGCCGCGGCAGCAAGCCCTCGGTCCCTTCCTCGCCTCTCGCGGCCGCCCCAGCCCCCGCCCCGCCGCCCCCGCCCTCGCTGCCCGCCGGCACCGCCGCCGTCGACGAGGCCGATGAAGACGACGGCATCGTCGAGTTCCTCGACAAGAGCACCGATAAAGCTGAAGCTCGCTTGGCAGCAAGGAGGCAAGCACGTGCAGAAGCAAGAGAAATCCGCATGCGAGAGTTGGAGCGGCAGCAGAAGGAACTGGAGGAAAATGCAGACAAAGTGTATGACATGTATCCAGAGCAGGTGAGTAGGCCCTCCAGGGTGGCCACTACTATGTCCACCCCACGCTTGTCGCGAGAAAGTACTAACAGCTACCAGTCCAGTCGGCGAAGTTCAGAGGATTCTTTAGAAGAGGGAATCAGTCTCCGGGATATGAGACAGGAACTTAAGGAGTATGAGGAGAAGTTCCGGAAGGCAATGGTTCAGAATGCCCAGTTAGACAATGAAAAAGCATCATTGACGTACCAAGTGGAATTGCTTAAGGATCGCCTTGATGATCTAGAGGAACAGCACTCTCAACTTCAGCGAGAACACAAGGAAAAATGTAGAGAGCATGATCAGCTGAAACGGGCTTGGGACAAACTGAAAGAGGACATGGAGTGGTGCAAATCCCAGCTGGAGGAGAGAGATCAGCTGATTCAGGAAGCAGGACTCATGATTGTTGGCGATACTCAGGTATCCAGTGATGAAGAAAGTAGTGAGGAAGATGATTCAGGTGACAAAACTCAGTCAAAACGACCTCCTAAACGAGCTTTGGTATCTATAGAGAATGCTGAACTTCTCCAAACAGCAGGTGAAGGAACATTAGATGTGCGGCTACGAAGGTTTGCTGAGGAACGTAATGAGCTCTTAGATCAAGTTAGACACTTGAAATTAGAACTTGAAGAGGAGCGGAGCCGCCATAAGTCAGATCGGCTGAGGCCGGCTGGTGCGGGCGCCAGCATGAATGGACCAGACACCGATCTCGTTGACATTCAGAGAGAAGCAAATAAACAATTAGGAGATTATAAATTTAGGCTTCAGAAAGCGGAGCAAGACGTTTCTACTCTACAGGCCAATGTTGCACGCTTAGAAAGTCAAGTGATACGATACAAATCTGCATCTGAGTCAGCTGAAAAAGTTGAAGATGAATTGAAAGTTGAAAAGAGGAAATTACAGAGAGAGCTTCGGGAAGCCCAAGCACGAGTTGAAGAACTTGAAACATCAAATAATCATTTGCAAAGGCGACTTGATAAGTTAAAGAATGCAAAGTCGGCACTTCTCAAGGAGTTGTGA
- Protein Sequence
- MIPLTGSSFTNNRNLIKMKMHAGPPSPAADSSLDDALRSAADDGSEDSCNFEDCSSGDGARTGAASPASTASTTASAAASPESECVNPLVRTDSAGRASGEDGDDVFDSAAEGEADAPGTPSTPVSPAGEARGRRGSSLGRTPPIRRGSKPSVPSSPLAAAPAPAPPPPPSLPAGTAAVDEADEDDGIVEFLDKSTDKAEARLAARRQARAEAREIRMRELERQQKELEENADKVYDMYPEQVSRPSRVATTMSTPRLSRESTNSYQSSRRSSEDSLEEGISLRDMRQELKEYEEKFRKAMVQNAQLDNEKASLTYQVELLKDRLDDLEEQHSQLQREHKEKCREHDQLKRAWDKLKEDMEWCKSQLEERDQLIQEAGLMIVGDTQVSSDEESSEEDDSGDKTQSKRPPKRALVSIENAELLQTAGEGTLDVRLRRFAEERNELLDQVRHLKLELEEERSRHKSDRLRPAGAGASMNGPDTDLVDIQREANKQLGDYKFRLQKAEQDVSTLQANVARLESQVIRYKSASESAEKVEDELKVEKRKLQRELREAQARVEELETSNNHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -