GBI_16869-RA
Basic Information
- Insect
- Gryllus bimaculatus
- Gene Symbol
- Rfx7
- Assembly
- GCA_017312745.1
- Location
- Scaffold202:1088129-1113704[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-34 1.2e-30 106.6 0.1 2 78 186 262 185 263 0.97 2 2 2.1 2e+04 -3.1 0.0 5 25 1451 1471 1449 1472 0.84
Sequence Information
- Coding Sequence
- ATGGACGGGCCGGGAGCAGCGGCGGCGGCCACCGAGGGCTCAGCTGAGCTCGTGGGCGCGGGCGCGGGCTCGGACGCGAGCGCGAGCGCGGGCGCGGGCGCGAGCGCGAGCGCGGGTGGTGGCGAGGCCCCTACCAGCCCCGGGGGTGGCCCGTGCTCCAGCGGCGAGGCACTAGGGTCGGGAGCTGCGGCCCCGGCCCCCGCGGACTCGACCCCGCACCCCGATGGCTCGCGTCCCGGCTCGCCCGCGCCGCCCGCGCCGCCCGCACCACCCTCGCCGCGCGACGGCACCCACTCGGACCTCCCCCGGGACGAGGCCGAGCGGCCGCCTCCGGACGGCGGTGGCCTTGATCAAAAAACGCGAAAAATTCGGCACATCGTTGAAGAAGCTATTAGTTCAGAGTCACGGCAAGTGGTACTGAAAATCCTTGATGAAGTGAACCAATTGTCAATGGTGGAAAAATTGTATCTTTATTTAAAGTTGCCCACTGGTAAAGCAGCTCCTGTGGATCCTCTCCGCCAGCCACTAAATCCATTGGGAAGTCGTTTCGAGATACAGCAAACTATAACGTGGATTAAAACTCATTTGGAAGAAGATCAAGAAGTATCATTGCCTAAGCAAGATGTCTATGATGAGTACCTGGAATATTGCTCCCAAAATAAGATGAAGCCCCTTTCAAATGCTGACTTTGGCAAAGTGATGAAGCAAGTGTTCCCATGTGTCCGGCCTCGTCGACTGGGCACTCGTGGCAACTCTCGTTACTGCTACTCAGGCATGCGCAAGCGGATGAAGTTGCAGCCACCACTGCTTCCGGATTTGGGTGAACACAAGTATTCCCCATCCCATTCTGAGGATGAAGTGGTGTCTGCCGCATCGTGCCTAATACGTGAGTGGGCCGAAAAACTACTCAGTGTGAAATTTGACAGTTTGCGTGATCTTGCATGCCATCTGGTGGAGAAGATGTGTGTTGACTCAAGGTCTGTGGCTGCATTCACCCTCCTCTCCGGGGCTGGAGGGAAGGTCAATGGCACAGAATCCACCTCTCCTTTGGGCTTGCCCTCAGCTCCTTCTGGAGGTACCAACAAACATTTGGAAACCCAGATGCAGCTCCAGCGTAAGCTCAAGGAGCGGGAAATGATTCGAGAACAAAAGCGCAAAATGCAGGATCAGCAACAACAGCAGTCTGCTGCTTTATCGAAAGGGTCAGCATTTGAGAAGCTGAAGCCATCAAAACGTGCCAAACTAGGTCATTTGAAGGATCGCAGAATAGCTTCTACTTTAGCACTGATGCCTGGAACTTCAACCTCTACCAATTCTACCGTATCATTAGGAGCCTCTGCTTCACCTTGGGATCCTGTAAGGTCAGAAGATGGAACTGTTGGCAAACTGGGTGCTTTGGGACGTAGAGGCAAGTCCGCATCGGTAGACAGCATTGCAACTACCTCTGACACAATTGCACTCCGTCAAGTGATGACAGCTTCTGTTCCAGTGACAAGTACTGATCTTGTCAGGGAGCCGAGAGGGGCCCTGGATGATGCATTTGTGCCAGTGCAGCCTCCTGCACAATTTGGTGTTACTCTCCCTTCTTCAGGCAGTGTTCCTGATAAACTTCCTATTCCACGTATAGTGAATAGTAATGCTAAGCCAAACTATTCTAAACCAGTCTTAGCTGCTTCAAAACCAGATTTAATTGCAATGCCACATCAAAAACTCTCTCTTGTTCTTCGGAAAAAGTTTTATAAACCAATTCAGCCAAAACCAGAAAATTTAGGTCTAAAGCCCAAAGAATTTCCTGAAGTTCAAGACAAAGAACACAGAGAGCTTGTTTCAGATGATGGCCCTATAAATGCTGAAGTATGCGTTGCCACCACTGTGAAACTGGAGGGAGAAGTAGCGCAACAAGTTGCAGAAAGTGATGTTAAACTTGAGAATGATCCTTTGAGTGATTATTTTCATGGTGGGCACAATTCACAAGAACAGGAAGAAGAACTCATGAGGTACTTTCAACATCAGACCAGCTCCTCAAGCAATGAAGAGTTAGATGAAGCACTTATGCCAAGGAGAAGTGCCACAGCAGATCCCACCAAGTCAGATCAGCTCTCTCAGCTGAGAATTCTTCTGGAACGTAACCTGAGCAATGCTACTGCTCCAACTGGTCTCAATGTGCGGAGACCACCTGGCTCAGACTGTCCAGCTGTATCTACAGGGCCACCTCTGGTTGAAGATCCTATTGCCAATGATGATGTGTTTCTGTCTGGTCCAGTTATGACGCTTCCACCTGGTGCATCTGCTTCTGCAAGCTTGTCTCTCTTATCACAGCGAAGCCAGCAAAAGAAGCAGTCTCAACCACCTCAACCACTTCCAAACATGCCTCAGAAACCTAGTTTACTCCCCTCTCTTTTAGCAAGTAATCACAGTGGTTCAAGTTTAAGTGTTCGCCGCCGAGTGAGTTTTGAAACATCTGTTACTGAACATTACCACAATGACAATGGTTTCCAAAACACAGTGCCACCTAGTCCTAACACACGGCGTAAATTTTTCAATTTCACCCCCATTTCAGCGGGACCTCATTCTCCTCTAGGTCAAAGGCCTTCAGCGCCATCTTCTAAACCATCTAGTGCTAATGCAAGTCCGTTTGTTTCACCAAGGAACACTCCGGTTCCCAGAAATAGACATATTTCTTCATTTCCTCCTGTTCAATTGAATAATCAGTTAGGAGCCCGAACAAGAGTACCTGCCAATAAAGTTGTTCGTTCGAACTCTGTGAGTAGTGGACTATCTCGTAATCAGTTCCAGCCAATGCGACCCAGACCACTATCAACAACTGCTCCATTATTACAGAATTCATGTGATGGTTCCTCTCAACCTGATTTCTCTCTTAATTTCTCACATACTCTTGATTCAGCTAGAGTGCTTGATTCCATACATGGAGAAATGCAGCTTTCCTTGCCACACTCCACTGCATCTCCAATGTCTTCATCTGCTCCACAGTCACCGATGATTCCCAATAATCTCATGCCTGCAGCAAGAAATTGTGTTGTAGAAGAACCATCGGAGTATGTGAACTCAGACTTTTTACTCAGTGATATGATGAATCATACAAAGGTTGTTCCTCAGTGCACTGATAATATGGATTCCAATTTCTTCTCAGATACAAGTGCAAATTTACAAGTGCCCCCGCATCAGCACCATCCACAACAAATGCCTGTTCCCACACCTGATCCCTTGGCACATGAAGTGAGTCAATTCTTCCCTGATGATGTAGAGAGAACACAGAGAAGTGTTCAACAGCAGCAACAACAACAACAACAACAACAGCAGCAACAACAGCAGCAACAGCAACAACAGCAGCAGCAACAGTTCCAGTACAGATCTCAATCTGTACCATTGCATCGCATGTTGTCTACAAGTGATTTGATATCTCCCCATTATGCCATGCCCCAGTCTGTAGACACAAATTTCCATTTGAACAATTTTAGTTTGTCAGCGGCAAGTTCGGTTGCTCCCACCCCAGTTCCAAGTGAATGTATGGATTTCACAAGCATTGCTGATGGTTCTACAGGAGGGCCTACCACTAATTTAATTATCGATGGTGCTGATCCTGAAACAGGACTAAATTCCGAAAATTTGGATAGAATCTTCAATATATTAGATGATGCTCAAGAACAGCAAAAGCAAGAAGAACAACAAAAGCAACAAAGGCAACAGGAGCAACAAAATCAACAACAACAGCAACATAATATGCAACAACACCAAGAACTTCATCAACACCCAGGGATTCATCAACAACAAGAACTCCAACACCAAGGAATTCATCAGTCTCAAGACCTTCAACAAATGCAGCAACACCAAGAAACACGGCTACACCAGTCTCACTGTCCAGAACAAGAACCGGTGCAATTAAGACAGCATCAGCAACATCATCACAACCTTCAACAGCAGCAGCAGCACCACCACCATCCACCACCACCACCACCACTACCACCACCACAACAGCAGCAGCAGCGACATCAACAGCAGCAGCAGCAACATCAAGAGCAGCACCATGAAATTGGCCTTACATTAGACTTAGTAGCAGCTGATAATGTGAGTGGAGATTTCCTGGACCTGCCTGGGCAGATGCGACCTATTGTTCAATCTTCACGCTCATATCCCAATACGCCAGTTCCATATAAATGTGCAAGCATAAGGGATCCTTTGGTTACTTCTTTCAGTGCAACATCAGAAACCTTGGAAAACAGCCCTACTGTCCTTGGCTCCAGGTCTTTACCACCAACACCCCTTCTTTCCATTTTAGATGATGAGACAACCCCATTCCAAAGTATTGTGGATAGAGATCCAATGTTAACCCTGAATGCACTCAATACACGGCTGTCAGATGACACAAGCAGTTATGTTCCTAGGAGGAACATGAACTCCTTGTTAGAAGAGTCATTGACCCTTGATACTCTTGATCTTCAAGATTGTGAAGGATTTTCACAGCTCACTGAAGTGGAATCCTCTGTTAATGACACTTAG
- Protein Sequence
- MDGPGAAAAATEGSAELVGAGAGSDASASAGAGASASAGGGEAPTSPGGGPCSSGEALGSGAAAPAPADSTPHPDGSRPGSPAPPAPPAPPSPRDGTHSDLPRDEAERPPPDGGGLDQKTRKIRHIVEEAISSESRQVVLKILDEVNQLSMVEKLYLYLKLPTGKAAPVDPLRQPLNPLGSRFEIQQTITWIKTHLEEDQEVSLPKQDVYDEYLEYCSQNKMKPLSNADFGKVMKQVFPCVRPRRLGTRGNSRYCYSGMRKRMKLQPPLLPDLGEHKYSPSHSEDEVVSAASCLIREWAEKLLSVKFDSLRDLACHLVEKMCVDSRSVAAFTLLSGAGGKVNGTESTSPLGLPSAPSGGTNKHLETQMQLQRKLKEREMIREQKRKMQDQQQQQSAALSKGSAFEKLKPSKRAKLGHLKDRRIASTLALMPGTSTSTNSTVSLGASASPWDPVRSEDGTVGKLGALGRRGKSASVDSIATTSDTIALRQVMTASVPVTSTDLVREPRGALDDAFVPVQPPAQFGVTLPSSGSVPDKLPIPRIVNSNAKPNYSKPVLAASKPDLIAMPHQKLSLVLRKKFYKPIQPKPENLGLKPKEFPEVQDKEHRELVSDDGPINAEVCVATTVKLEGEVAQQVAESDVKLENDPLSDYFHGGHNSQEQEEELMRYFQHQTSSSSNEELDEALMPRRSATADPTKSDQLSQLRILLERNLSNATAPTGLNVRRPPGSDCPAVSTGPPLVEDPIANDDVFLSGPVMTLPPGASASASLSLLSQRSQQKKQSQPPQPLPNMPQKPSLLPSLLASNHSGSSLSVRRRVSFETSVTEHYHNDNGFQNTVPPSPNTRRKFFNFTPISAGPHSPLGQRPSAPSSKPSSANASPFVSPRNTPVPRNRHISSFPPVQLNNQLGARTRVPANKVVRSNSVSSGLSRNQFQPMRPRPLSTTAPLLQNSCDGSSQPDFSLNFSHTLDSARVLDSIHGEMQLSLPHSTASPMSSSAPQSPMIPNNLMPAARNCVVEEPSEYVNSDFLLSDMMNHTKVVPQCTDNMDSNFFSDTSANLQVPPHQHHPQQMPVPTPDPLAHEVSQFFPDDVERTQRSVQQQQQQQQQQQQQQQQQQQQQQQQQFQYRSQSVPLHRMLSTSDLISPHYAMPQSVDTNFHLNNFSLSAASSVAPTPVPSECMDFTSIADGSTGGPTTNLIIDGADPETGLNSENLDRIFNILDDAQEQQKQEEQQKQQRQQEQQNQQQQQHNMQQHQELHQHPGIHQQQELQHQGIHQSQDLQQMQQHQETRLHQSHCPEQEPVQLRQHQQHHHNLQQQQQHHHHPPPPPPLPPPQQQQQRHQQQQQQHQEQHHEIGLTLDLVAADNVSGDFLDLPGQMRPIVQSSRSYPNTPVPYKCASIRDPLVTSFSATSETLENSPTVLGSRSLPPTPLLSILDDETTPFQSIVDRDPMLTLNALNTRLSDDTSSYVPRRNMNSLLEESLTLDTLDLQDCEGFSQLTEVESSVNDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -