Basic Information

Insect: Gortyna flavago
Gene Symbol: -
Assembly: GCA_963669345.1
Location: OY770151.1:2964216-2971233[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.18 15 7.1 1.9 1 23 190 213 190 213 0.91

2 10 0.33 26 6.3 3.2 1 23 234 256 234 256 0.97

3 10 0.14 11 7.5 0.1 2 23 267 288 266 288 0.95

4 10 0.039 3.2 9.2 0.1 2 23 294 316 293 316 0.96

5 10 7.2e-06 0.00058 20.9 1.7 1 23 322 344 322 344 0.98

6 10 0.00069 0.056 14.7 0.1 1 23 350 373 350 373 0.95

7 10 0.0015 0.12 13.6 3.0 1 23 382 404 382 404 0.99

8 10 0.0009 0.073 14.3 1.7 3 23 414 434 413 434 0.98

9 10 9.1e-06 0.00074 20.6 1.8 1 23 440 462 440 462 0.98

10 10 0.001 0.085 14.1 5.9 1 21 468 488 468 491 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.18	15	7.1	1.9	1	23	190	213	190	213	0.91
2	10	0.33	26	6.3	3.2	1	23	234	256	234	256	0.97
3	10	0.14	11	7.5	0.1	2	23	267	288	266	288	0.95
4	10	0.039	3.2	9.2	0.1	2	23	294	316	293	316	0.96
5	10	7.2e-06	0.00058	20.9	1.7	1	23	322	344	322	344	0.98
6	10	0.00069	0.056	14.7	0.1	1	23	350	373	350	373	0.95
7	10	0.0015	0.12	13.6	3.0	1	23	382	404	382	404	0.99
8	10	0.0009	0.073	14.3	1.7	3	23	414	434	413	434	0.98
9	10	9.1e-06	0.00074	20.6	1.8	1	23	440	462	440	462	0.98
10	10	0.001	0.085	14.1	5.9	1	21	468	488	468	491	0.94

Sequence Information

Coding Sequence: atgGAGAAAATATGcagattttgtttgaaagtaTCTAATAAAAACATGTGCAGTTTGCAAGAATGCGATATACTCTATAGCATTCAAAAATTTCTAACGATAAAAATACCAACTGAAGATTCCTTCCCGAGTAATTTATGCAAGgaatgctttaaaaaaatatcgcaAATTATTAAATTCTGTATAGCTGTCAAAGACAATGAAgataaattacaatattattcaaGAATTGGCCAATTACAagattattattcaaaatttacaaatttaCAGCAAAGTAAAGATGAACAAGAAGAGTTTAAAATTGAAACACATTATATTGTGAAAGTTGAAGATAATACAAATTTTGGGGATTATGATcattttaaaaactatgaatTGTCTGATGATATTAACGAGACCCATTTCAGTTCTGATGATGAGATAACACTGTCctcaataaagaaagaaaatgaacTTAATCCCACTGgtccattaaaaaatattacaaaatttagACCTATAAAGAGTATCATTCCTAAAAGAAGAAAGTTAAAAGAACCAGAAAATGTAGAATATGTAAAACCATTTACTTGTCTGACATGTTTAATAGAATGTAATTCTCAAGCAGACCTCACCAAACATTACTATGCCAAACACCTCAACAAAAAGACTGGTCATAAAAATTATACGCAACATAAATCGGAGGATGAGACTACGTACAGCTGCAACAGTTGTGAGAAAACATGCATTTTGAAGAAAGatattgtaaaacataataAGAGTCATATTGATGATGAAAAAGATGACAGACCGTTGATTTGTAAACTTTGTGCCAGAACATACAAGAGAGTCCCTGACATAGTTCGCCACGCTAGAGCCCACAACGGCTTCAAACTGCAGTGCCCATACAATTGTGGGTACACCACCGCTTACGCAGGCGCTATGAAAGACCATAAGAGTAGACATTTGGATGAATATAAGTATACCTGTAAGACATGCGGCAAGGGTTTCAACACAAAGACCTGGTATGAGCAACACCAGAACCTCCACACCGGACAGAAGCCGTTCGTCTGCAACATATGTGGCGTCGCCTTCCCACTGGCCAGATATCTACAAACTCACAAGAGCTCGTTGCATCCGCAGTCGTCAAGCTTGAAACGGTACCAATGTCTCCATTGTGACGAAAAGTGCGACAGTGCCAAAAGTCTTGCTTTACATTTGCagAAACACGGTATAAACAAAGAACCGTTTTCTCTTTGCGACTTTTGTGGCAAGATTGTTTCATCTACTTATCAACTGCAGTACCATCACAGAATGCACTTGGGAGTGAAGCCATACTCATGCACAATATGCAAAAAAAAGTTTGCGAAAAAGTACAACGTGCAACTTCACATGAGTATCCATACCGGTGATAAGTCGCACGTTTGCGTTCATTGCGGCAAGCAGTACTCGCAGCGAAGCACTCTGCTGAGACATCTCAAATGctACCACGGCGGCGCCGGCGACACGTCAACATAG
Protein Sequence: MEKICRFCLKVSNKNMCSLQECDILYSIQKFLTIKIPTEDSFPSNLCKECFKKISQIIKFCIAVKDNEDKLQYYSRIGQLQDYYSKFTNLQQSKDEQEEFKIETHYIVKVEDNTNFGDYDHFKNYELSDDINETHFSSDDEITLSSIKKENELNPTGPLKNITKFRPIKSIIPKRRKLKEPENVEYVKPFTCLTCLIECNSQADLTKHYYAKHLNKKTGHKNYTQHKSEDETTYSCNSCEKTCILKKDIVKHNKSHIDDEKDDRPLICKLCARTYKRVPDIVRHARAHNGFKLQCPYNCGYTTAYAGAMKDHKSRHLDEYKYTCKTCGKGFNTKTWYEQHQNLHTGQKPFVCNICGVAFPLARYLQTHKSSLHPQSSSLKRYQCLHCDEKCDSAKSLALHLQKHGINKEPFSLCDFCGKIVSSTYQLQYHHRMHLGVKPYSCTICKKKFAKKYNVQLHMSIHTGDKSHVCVHCGKQYSQRSTLLRHLKCYHGGAGDTST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00925166; iTF_01095313; iTF_01094384; iTF_01093499; iTF_00746136; iTF_00071814; iTF_00123685; iTF_00121801; iTF_00124598; iTF_00667974; iTF_01440434;
90% Identity: iTF_00071814;
80% Identity: -