Basic Information

Insect: Gortyna flavago
Gene Symbol: -
Assembly: GCA_963669345.1
Location: OY770155.1:3883009-3888201[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.0016 0.13 13.5 1.3 1 23 5 27 5 27 0.93

2 25 0.17 14 7.2 0.3 1 23 100 122 100 122 0.96

3 25 0.0019 0.15 13.3 0.2 1 23 126 148 126 148 0.95

4 25 0.0086 0.7 11.2 0.3 1 23 153 176 153 176 0.95

5 25 0.002 0.16 13.2 2.5 1 23 182 205 182 205 0.93

6 25 0.11 8.8 7.8 0.4 1 11 212 222 212 226 0.90

7 25 0.21 17 6.9 2.1 1 23 334 357 334 357 0.94

8 25 0.27 22 6.5 0.1 2 23 382 404 381 404 0.94

9 25 0.17 14 7.2 0.1 1 23 428 450 428 450 0.93

10 25 0.00016 0.013 16.7 0.2 1 23 454 476 454 476 0.98

11 25 0.00016 0.013 16.7 0.5 1 23 481 504 481 504 0.96

12 25 0.012 0.95 10.8 0.4 2 23 511 533 511 533 0.93

13 25 0.11 9.1 7.7 6.5 1 23 540 563 540 563 0.96

14 25 0.00066 0.053 14.8 5.3 2 23 570 591 569 591 0.96

15 25 0.00022 0.018 16.2 1.7 1 23 597 619 597 619 0.98

16 25 0.86 70 4.9 0.2 1 23 762 785 762 785 0.79

17 25 0.0088 0.71 11.2 0.2 2 23 811 832 810 832 0.96

18 25 0.026 2.1 9.7 0.3 1 23 854 876 854 876 0.98

19 25 3.7e-05 0.003 18.7 0.1 1 23 880 902 880 902 0.98

20 25 0.0018 0.14 13.4 1.4 1 23 907 930 907 930 0.93

21 25 7e-05 0.0057 17.8 0.4 2 23 937 959 937 959 0.97

22 25 0.00012 0.0094 17.1 1.2 1 23 966 989 966 989 0.98

23 25 0.0066 0.53 11.6 4.7 1 23 995 1017 995 1017 0.96

24 25 5.4e-05 0.0044 18.2 2.8 1 23 1023 1045 1023 1045 0.97

25 25 0.096 7.8 7.9 0.5 3 23 1050 1071 1049 1071 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.0016	0.13	13.5	1.3	1	23	5	27	5	27	0.93
2	25	0.17	14	7.2	0.3	1	23	100	122	100	122	0.96
3	25	0.0019	0.15	13.3	0.2	1	23	126	148	126	148	0.95
4	25	0.0086	0.7	11.2	0.3	1	23	153	176	153	176	0.95
5	25	0.002	0.16	13.2	2.5	1	23	182	205	182	205	0.93
6	25	0.11	8.8	7.8	0.4	1	11	212	222	212	226	0.90
7	25	0.21	17	6.9	2.1	1	23	334	357	334	357	0.94
8	25	0.27	22	6.5	0.1	2	23	382	404	381	404	0.94
9	25	0.17	14	7.2	0.1	1	23	428	450	428	450	0.93
10	25	0.00016	0.013	16.7	0.2	1	23	454	476	454	476	0.98
11	25	0.00016	0.013	16.7	0.5	1	23	481	504	481	504	0.96
12	25	0.012	0.95	10.8	0.4	2	23	511	533	511	533	0.93
13	25	0.11	9.1	7.7	6.5	1	23	540	563	540	563	0.96
14	25	0.00066	0.053	14.8	5.3	2	23	570	591	569	591	0.96
15	25	0.00022	0.018	16.2	1.7	1	23	597	619	597	619	0.98
16	25	0.86	70	4.9	0.2	1	23	762	785	762	785	0.79
17	25	0.0088	0.71	11.2	0.2	2	23	811	832	810	832	0.96
18	25	0.026	2.1	9.7	0.3	1	23	854	876	854	876	0.98
19	25	3.7e-05	0.003	18.7	0.1	1	23	880	902	880	902	0.98
20	25	0.0018	0.14	13.4	1.4	1	23	907	930	907	930	0.93
21	25	7e-05	0.0057	17.8	0.4	2	23	937	959	937	959	0.97
22	25	0.00012	0.0094	17.1	1.2	1	23	966	989	966	989	0.98
23	25	0.0066	0.53	11.6	4.7	1	23	995	1017	995	1017	0.96
24	25	5.4e-05	0.0044	18.2	2.8	1	23	1023	1045	1023	1045	0.97
25	25	0.096	7.8	7.9	0.5	3	23	1050	1071	1049	1071	0.96

Sequence Information

Coding Sequence: AtgaaaaatttatatatttgcttctattgccatcaacagttCTCTGACCCTGCAACATTAAGGAgtcataacatagaacatggtTTTCTGACGACATCGCAAGTCAAATACGCTTTGTCGAAACTGAAGAAGTACGAATTAGTCAAAGTCGATATAACCGATGTAGGTTGCAAGCTATGCGACGACCTGATCCCAGATTTTCCCTCCCTAAAATGGCATCTGCTAGAAAAGCATAAGAAGAATTTAGATCCGAAATCTGGGGATGGTGTCCTTCCATTTAAAGTTACAATCAACGAATTCCCATGCGCGCTTTGTATAGAAAAATACACAGAGTTCAAATCTCTAAACCAGCATATGAACGTACATTTCCAAAATTTCATTTGCGAGCAATGTGGCACTGGTTTTATAACTCCTGAACGTTTGAGGACTCACGCGTTCTCCCACGAAACGGGATCGTTCCCTTGTGATAGCTGTGACAAAGTATTTAGGTCTACTAACGCTAAAAACGAACATTATGCTACCGTACATATGAAAGTAAAACGCCATAGATGTCCCCATTGTCCTGAAGCATTTAGAAATTACTTCCAGAGAAATAAACATATTTCTGCCGTCCACGGCCTGAAGTTAAAAGAATTCAAGTGCACCATGTGTCCTAAAGTTTTCACTATCAGTGgaTCGGACTCCGAAATACCTGATACGAAGCGAAGAATCATCCCGTTATTCCAAGTGTCTTACGACAGAAGCTTGTGTAGACCTCTCGGGACATTAATAGACTTCAGTAGATTCCGTTCTTCACCTGCAACAAGAGATTTCTCTCCGTCGCGCAGTCCATCACCTGTTTACGTAGGGACTGAACCGACGCCTTTAATAGATAGTACGCCGACATTATCCGTCCAAACTGTGAAACCTAAGATAAAGAAAACTCCCGATATCAGGCAGAACGCTTTAGCTGTGTTTGAATTTTCAACGGTCTACCCATTCGTTTATGGAAGCAACAAGTTCAAATGTTTCATCTGCTCGCAACCGTTTCTGGACCTTAATGAATTGAAGCTGCACATGCATTTCTCCCATGCCTTCGCACCTCTTAAGAGACTTGTTAATAATCGAAGAGAGAATGTCTTAAAAGTAGATGTAAGTGATATAACCTGCAAGATATGTTCAGAAAAACCTCCCAATCTGGTCGAACTCAAGCGCCATCTCAAAGAAGTACACGAAAAACCAATGGATTTAGAAATCAAAGACAATATGATCCCGTTCAATCTTGAACTCGTAGACGATGCCTACAAATGCGTTATATGCGAACAAAGTTTTATAAAAGTGAGAATTTTAGTTATACATATGAGTGAACACTTCAATAATTACAGCTGTGAGATATGCGGATCAGTCTTCATGACTTTACGGCTATTGAAGAAACATTTAGAAGTCCATGACTCTGGAAACTTTCCTTGCGATCGATGCAATAAAGTTTTCAGCACTCCTTATAAACGGACTTTGCATATACGAGGCGTGCACTTGAAGCAGTGTCCTAGAAGATGTCCAATGTGTCCAGAAAAGTTTAATTCGAACTATAAAAGGACGATACACTTACAAGATGTCCATAATCAGGAGACTAGAGTGCATAAATGCAAGACGTGCGGCCGAGGATTCAATCTGAAGTATCATTTGGTCTGTCACGTACGGTCTGTCCATCTCCAGGAGCGGAATCAGCAGTGTGATGTGTGTCACCAAAGGTTTTGCAACAAGGAGTCTTTAAAGCGCCACAGGGTTATACATACAGGGGAGAAGAATCATAAATGTGATGTTTGTGGGATGGCGTTCTTGAGGAGAAAGAATTTGAAGGACCATTTGCGTTTGCATGATATCAgtCTCATCCAGAAATCAAATTCTACGATCACTCTGAAAGACGAAGATGGAACAGAAATTAAACTTACAGTCCTCAAATATCCAATTTCTTTACAAACTCTAGAATATGAAACTCAAGATATTACCGCCACGAACaaacgaaaaaagaaaattggcaAAACGAAAGACGTTAAAAAGAGCAACGTCAAGTTAGAAAACATATCTTTGTTGAAAGAACCAGTATCTATAAATAATGTTGATTGGAAAAACCATAATGAGCAAGAAAATTCGGTGACATTTAATGTGAAAACTGTACAAGGATTTATCCGTGCACCAACAAGACAACGAAGTGAAAACGTTGACTACGAGACTTGGAAACAGAATGCCTTAATCATCTTTGAAAACTCGTATGTCTATCCATTTATACATGCGGGTAATAAATACAAATGCGTCATCTGCTCCAAGCCTTTCCTAGACGCTAATATATTGAAAACCCATACTATAAACGAACATACAATCAAAGAAATGAAACGAGCATTAAATAACAGAATTAGAGACAAAAATCTAAAAGTAGACGTCAGTCATCTCCAGTGCAAGATCTGTTTGCAATCCCTACCTGATCTGCAGAACTTAAAAACGCATTTACAGGAGCATGGCAAGAAAATACAACCGGATTTGCAAGATAATATTATACCTTACAAGCTAGGAGGCGAGAGTTTCGAATGTCAAGTGTGTGGGGAAAAGTATCTTAAACTACGGCTCCTTATTATCCATATGAGTAAACATTACAACAATTACAGCTGCGAAATATGCGGTTCTGTATTCATTTCACTGCAGTTACTAAAAAGACATTTACAGATTCACGAATCAGGTAGCTTTCCTTGTAGTAAATGCGATAAAGTATTCACGAACTCTACAAAAAGGTCACTACACTACAAGGGAGTGCATCTGAAGCAATTCCCGCGACGATGCCCAATTTGTCCCGAAAGATTCAACTCAAATTATCAAAGGACCAAACACTTGCGTGTAGCACATAACCAATCTACTGGATTGTTTAGATGCGACACTTGTGGACGGGAATACGACTTGAAATACCATCTTCTCGTCCACATAAGGTCTGTTCATCTCCAAGAGAGGAATCATGAGTGTCCAATGTGTAATTCGAGATTTTTCTCCAAGTACTGCCTTTCGAGGCATATGGTTATACATACGGGGGAGAAGAATTTCAAATGTGAGGTTTGTGGGAAGGCTTATGCGAGAAGGAAGAACCTTCGAGACCATTGCAGGTCCCATGATGTTGGATTGTGTGCTATTTGTGGTCTCAACTGTGGAGATCATAATAATCTTGTCGCTCATGTTAATAGTGTGCATTAA
Protein Sequence: MKNLYICFYCHQQFSDPATLRSHNIEHGFLTTSQVKYALSKLKKYELVKVDITDVGCKLCDDLIPDFPSLKWHLLEKHKKNLDPKSGDGVLPFKVTINEFPCALCIEKYTEFKSLNQHMNVHFQNFICEQCGTGFITPERLRTHAFSHETGSFPCDSCDKVFRSTNAKNEHYATVHMKVKRHRCPHCPEAFRNYFQRNKHISAVHGLKLKEFKCTMCPKVFTISGSDSEIPDTKRRIIPLFQVSYDRSLCRPLGTLIDFSRFRSSPATRDFSPSRSPSPVYVGTEPTPLIDSTPTLSVQTVKPKIKKTPDIRQNALAVFEFSTVYPFVYGSNKFKCFICSQPFLDLNELKLHMHFSHAFAPLKRLVNNRRENVLKVDVSDITCKICSEKPPNLVELKRHLKEVHEKPMDLEIKDNMIPFNLELVDDAYKCVICEQSFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDRCNKVFSTPYKRTLHIRGVHLKQCPRRCPMCPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHVRSVHLQERNQQCDVCHQRFCNKESLKRHRVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDISLIQKSNSTITLKDEDGTEIKLTVLKYPISLQTLEYETQDITATNKRKKKIGKTKDVKKSNVKLENISLLKEPVSINNVDWKNHNEQENSVTFNVKTVQGFIRAPTRQRSENVDYETWKQNALIIFENSYVYPFIHAGNKYKCVICSKPFLDANILKTHTINEHTIKEMKRALNNRIRDKNLKVDVSHLQCKICLQSLPDLQNLKTHLQEHGKKIQPDLQDNIIPYKLGGESFECQVCGEKYLKLRLLIIHMSKHYNNYSCEICGSVFISLQLLKRHLQIHESGSFPCSKCDKVFTNSTKRSLHYKGVHLKQFPRRCPICPERFNSNYQRTKHLRVAHNQSTGLFRCDTCGREYDLKYHLLVHIRSVHLQERNHECPMCNSRFFSKYCLSRHMVIHTGEKNFKCEVCGKAYARRKNLRDHCRSHDVGLCAICGLNCGDHNNLVAHVNSVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01526319;
90% Identity: iTF_01095159;
80% Identity: -