Gfla027723.2
Basic Information
- Insect
- Gortyna flavago
- Gene Symbol
- -
- Assembly
- GCA_963669345.1
- Location
- OY770155.1:4286145-4298542[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.0069 0.56 11.5 0.5 1 23 78 101 78 101 0.95 2 35 0.0039 0.32 12.3 0.3 1 23 201 223 201 223 0.96 3 35 7.8 6.3e+02 1.9 1.4 1 23 228 251 228 251 0.86 4 35 0.33 26 6.3 1.8 2 23 259 281 258 281 0.95 5 35 0.00097 0.079 14.2 1.8 1 23 288 311 288 311 0.96 6 35 0.00018 0.014 16.6 5.7 1 23 317 339 317 339 0.97 7 35 7.8e-07 6.3e-05 24.0 3.1 1 23 345 367 345 367 0.99 8 35 5.7e-06 0.00046 21.2 0.4 1 23 373 396 373 396 0.96 9 35 0.018 1.5 10.2 1.0 1 23 471 494 471 494 0.95 10 35 0.003 0.25 12.7 0.2 1 23 594 616 594 616 0.98 11 35 0.96 78 4.8 2.6 1 23 621 644 621 644 0.94 12 35 2.8 2.3e+02 3.3 2.8 1 23 651 674 651 674 0.93 13 35 0.00025 0.02 16.1 0.6 1 23 681 704 681 704 0.97 14 35 0.001 0.082 14.2 6.3 1 23 710 732 710 732 0.97 15 35 0.00011 0.0093 17.1 0.3 2 20 739 757 738 759 0.94 16 35 0.018 1.5 10.2 0.9 1 23 829 852 829 852 0.95 17 35 7 5.6e+02 2.1 0.2 2 23 880 902 879 902 0.89 18 35 4 3.2e+02 2.9 2.6 2 23 925 948 924 948 0.88 19 35 0.0082 0.67 11.3 0.1 1 23 952 974 952 974 0.93 20 35 3.8 3e+02 2.9 1.5 1 23 979 1002 979 1002 0.87 21 35 0.33 26 6.3 1.8 2 23 1010 1032 1009 1032 0.95 22 35 0.00097 0.079 14.2 1.8 1 23 1039 1062 1039 1062 0.96 23 35 0.00021 0.017 16.3 2.0 1 23 1068 1090 1068 1090 0.98 24 35 9.9e-06 0.0008 20.5 1.8 1 23 1096 1118 1096 1118 0.99 25 35 2.5e-06 0.0002 22.4 0.3 1 23 1124 1147 1124 1147 0.97 26 35 0.011 0.87 10.9 1.4 1 23 1211 1234 1211 1234 0.94 27 35 0.24 20 6.7 0.2 2 23 1261 1283 1260 1283 0.96 28 35 0.0057 0.46 11.8 2.3 2 23 1306 1327 1305 1327 0.96 29 35 0.00038 0.03 15.5 0.2 1 23 1331 1353 1331 1353 0.95 30 35 0.019 1.5 10.2 1.0 1 23 1358 1381 1358 1381 0.97 31 35 0.0037 0.3 12.4 1.4 1 23 1388 1411 1388 1411 0.95 32 35 0.0012 0.096 13.9 0.5 2 23 1419 1441 1418 1441 0.95 33 35 0.00045 0.037 15.3 3.1 1 23 1447 1469 1447 1469 0.97 34 35 5.4e-05 0.0043 18.2 1.7 1 23 1475 1497 1475 1497 0.99 35 35 0.012 0.98 10.8 5.0 1 23 1503 1526 1503 1526 0.98
Sequence Information
- Coding Sequence
- ATGATCATTTTCTTTATAGATAAACAAGGAAAAGTGGCTACAGCTACGATCATCAAAATAGAGCCGAAAGCTGAAGAAATTGTAGTACTTCAGGAagagcaaataaaattaaatccagaGACTGCGCCTCGACCACGCATAAAGCGACTACTGCACAAGCATCTACACAATCTGAAAATAATCCTAGAATCTACTAACGCCACGATGATACTCAAACATGGAGATAAGGGATATTTGTGCTGCTATTGCCCGGAAGCTTTCCAAGAACCCATGAATTTAAAAGTACACACTTTAACGGAACATCAAAATGCAGAAAAGTTCTATGGCAACATTAAAGCCAGAGGACCCGCAAGGTTCTTAGTCAAACTTGATATCACGAACCTAAAATGCATGCTTTGCAGCATCAATATAGACTCTCTCGAAGATCTATTCGTCCATCTGACAGAGAAACATAATAAGAACTTCCACACTGATatacaaaatcaaatatttcCTTTCAAGTTCAATACGAAGCAACTGAAATGCTGCCAATGTACTAATGACGGAGTTTTCGCCACGTTCAGCGCATTACACGAGCATATGCACAAACACTACCGATACTTTATTTGTAATGAGTGTGATGCTGGATTTATCAATCATGATACATTATCCAGTCATAGAGTCATTCACACGAAAGGAACCTTCGCCTGCCGACATTGTTCTGTTGTATTCGATAACGTATTCAAGAGAAGAAACCATGAGATGGGCAGCCATAAGAAACCTGGCAAATTGAATAAATGCCATTTCTGCAATGAAggttttaaggattatattaCGAAGGAATTGCATCTTTCTACGGTTCATGGCGTTGCTCCACGGAAACATAATTGCACCGCCTGTGACAGGAGCTTTCCTTCTAATAGTTTTCTTAGTGCACATGTCAGACGCTTCCATCTGATGGAAAAACGACACAAATGTTCAGAGTGCGACAGAGCGTTCTTCAGAGAAAGCCATCTAACGAAACATAAGTTGAGTCATACAGGAGCTAAAAACTTCAAATGTGAAGTCTGTTCAAAGCATTTCGCCAGTAAATCTTCTTTATCTCGACATATGAGGATTCATAACAATGATAGGCGTTTTAAATGTACGATATGTGATCAGGCGTTTGTGCAGAAACCTAGCTTGACATGGCATATGAAGGGAAAGCATGCAGATGCTTATAAACAACAAAAAGTGGCTACAGCTTCGAAAATCAAAATAGAGCCGAAAGCTGAAGGGGCTGTAATACCTACTGAAGaccacataaaaataaaaccagagACAGCGCCTCGACCAGTACAAAAGCGACAACTACACAAGCATCTGCACAATCTGAAAATAATCCTAGAATCTACCAACGCCACGATGATACTCAAACATGGAGATAAGGGATATTTGTGCTGCTATTGCACGGAAGCTTTCCAAGAACCCATGAATTTGAAAGTACACACTTTAACGGACCACCAAAATGAAGACAAAATCTATGGCACCTTAAGAGGCAGAGGACCATCTAGGTTCTTAGTCAAACTTGACATAACTAACCTAAAATGCATGCTCTGCAGCGCCAATGTAGACTCTCTCGAAGATCTATTCGTCCATCTGACAGAGAAACATAATAAGAACTTCCACACTGATATACGAAATCAAATATTTCCTTTCAAGTTCGATACGAAGCAACTGAAATGCTATCAATGTACTAGTGACGTCATTTTCGCCACGTTCAGCGCATTACACGAGCATATGCACAAACACTACCGACACTTCGTTTGTAACGAGTGTGATGCTGGATTCATCAATCATATATCATTAGCCAGTCATAGAGTCACTCACACGAAAGGGACCTTCACCTGTCGACATTGTCCTGTCGTATTTGATAACGTATTCAAAAGAAAGAACCACGAAATGCGTAGCCACAGTAAAGCTGGCAAATTACATATATGCCATTTCTGTAATGAAGGTTTTAAGGAATATGTAACGAAGGAATTGCATCTAACTACGGTTCATGGCGTTGCTCCGCGGAAATATAACTGCTCGGCGTGCGACAGGAGCTTCGCATCCAATAGTTTCCTTAGCGCACATGTCAGAAGTTTCCATCTGATGGAGAAAAGTCACAAATGTTCACAGTGCGATAAAGAGTTCTTCAGAGAAGCTCACCTCAAGAAACATAAGTTGAGTCATATTGAGGCTACAGATCTCATATGTGAAGTCTGTTCAAAGCATTTCGCCAATAAATCTAGTCTGTCGCGGCATATGGATGAACAAGGAAATGTGGCTACAGCTCCGAAAATCAAAATAGAGCTGACAGCTGAAGAAACTGTAGTACCTCAGGAAGAGCATATAAAAATCAATCCAGAGTCAGCGCCTCGACCACGCATAAAGCGACTACTGCACAAGCATCTACACAATCTGAAAATAATCCTAGAATCTACCAACGCCACGATGATACTCAAGCATGGAGATAAGGGATATTTGTGCTGCTATTGCACGGAAGCTTTCCAAGAACCCATGAATTTGAAAGTACACACTTTAACGGAACATCAAAATGCAGAAATATTCTATGGCAACGTTAAAGCCAGAGGACCCGCAAGGTTCTTAGTCAAACTTGATATCACGAACCTAAAATGCAAGCTTTGCAGCGCCAATATAGATTCTCTCGAAGATCTATTCGTCCATCTCACAGATAAACATAATAAGAACTTCCACACTGATatacaaaatcaaatatttcCTTTTAAGTTCAATACAAAGGAACTGAAATGCTATCAATGTACTAGTGATGTCGTTTTCGCCACGTTTAGCGCGTTACACGAGCATATGCACAAGCACTACCGACACTTCGTTTGTAACGAGTGTGATGCTGGTTTCATTAATCACATATCATTATCCAGACATGGCGTAATTCACACGAAAGGAACCTTCGTCTGCCGACATTGTTCTGTTGTATTCGACAACGTATTCAAGAGAAGAAACCACGAGATGGGCAGCCATAAGAAACCtggcaaattaaataaatgtcatTTCTGCAATGAAggttttaaggattatattaCGAAGGAATTGCATCTTTCTACGGTTCATGGCGTTGCTCCACAGAAACATAATTGCACCGCGTGTGACAGGAGCTTTCCTTCTAATAGTTTTCTTAGTGCACATGTCAGACGCTTCCATCTGATGGAAAAACGACACAAATGTTTCGAGTGCAATAGAGCGTTCTTCAGGGGTGGCGACCTAAAGAAACATATGTTGATACATACAGGGGCTAAAGATTTTAAATGTGTAGTCTGTTCAAAGTATTTTGCTAAGAAATCCACTCTAAATCAGCATATGAGGATTCATAACAATGATAGGCGTTTTAAATGTACAATATGTGATCAGGCGTTTGTGCAGAAACCTAGCTTGACCTGGCATATGAGGGCAAAGCACGAAGATGCTTGTGATCAACAAAGAACTGTTGAGGAAAAAGAAACGGATGGCAATGACCTTATGGAAAATATAGATGAAAAAGAACTAAAAATAACACCCAGGACCGAACTGTTAAAACATCGAAGTAACATTAAAGAAGTACTTCTTAATTCTAACGCAACGCCTGTAAGACGGTACGGAGGGATCGGATATACGTGCTGCTACTGTCCAGACCAGTTCGAACGCCCTGCGGATCTTAAGAAACATACTCTAGAGAACCACAGAAATGTCTCAGAAGCAAACTTTATGAAGAACATGAACATGTCCGAATATATCGTCAAGTTAGATATAACTTCATTGAAATGCAAGCTTTGCGACAGTAACATGAATACTCTAGATAACTTAATAGACCATCTTCAAAGCGTGCATGAGAAAAAAATCTATAAGAATCATGTAAACCATATCTTTCCTTTCAAATTCGGCAACGATTTACTGATATGCAATATTTGCTCGAACACTTTTAGCAAGTTCAGGACCCTTGTTAGACATATGCATATTCATTACAGGAATTATATTTGCACCGTTTGCGACACCGGATTCGCCAACCGTAACTCATTAACACAACATTTAGTTAATCACAAAACAGGGGAATTTGTTTGTGACTACTGTCCAAAGTTCTATCCTACTCTTGTTAAAAAACGAATGCACGAAAGAACATCCCACACACACGTAGACGCTACTTATAAATGTGGTTATTGTCAAGAAACTTTTAAAGATCATGGACAAAAGGAAGCTCATGTAACTTCTGAACACGGTGTGGTATCATTGAAAAGTGTATGTCAAGCTTGCAACAAAGTATTTCCCAATCGGAAGAAACTTAACATACACGTTAAAAGAGACCATCTAATGGAGAGGCCACACAAATGTAAGGAGTGTGACATGTCGTTTTATTCCACGACAGGGCTAAAAAGTCATATGGTCAAGCATACAGGGTTGAAAGAATTTCAGTGCTCAGTATGTCTGAAGAAATATGGGAGGAAGAAGACATTGAATGCTCACATGCAGACACATTCTGAGGAGAAGAGGTTCAAATGTGAAAAGTGTGCGCAGAAATTTACGCAGAAATGTACTTGGAGAGGACATATGAGGTCCAAACATGCAGAAATTGTTTAA
- Protein Sequence
- MIIFFIDKQGKVATATIIKIEPKAEEIVVLQEEQIKLNPETAPRPRIKRLLHKHLHNLKIILESTNATMILKHGDKGYLCCYCPEAFQEPMNLKVHTLTEHQNAEKFYGNIKARGPARFLVKLDITNLKCMLCSINIDSLEDLFVHLTEKHNKNFHTDIQNQIFPFKFNTKQLKCCQCTNDGVFATFSALHEHMHKHYRYFICNECDAGFINHDTLSSHRVIHTKGTFACRHCSVVFDNVFKRRNHEMGSHKKPGKLNKCHFCNEGFKDYITKELHLSTVHGVAPRKHNCTACDRSFPSNSFLSAHVRRFHLMEKRHKCSECDRAFFRESHLTKHKLSHTGAKNFKCEVCSKHFASKSSLSRHMRIHNNDRRFKCTICDQAFVQKPSLTWHMKGKHADAYKQQKVATASKIKIEPKAEGAVIPTEDHIKIKPETAPRPVQKRQLHKHLHNLKIILESTNATMILKHGDKGYLCCYCTEAFQEPMNLKVHTLTDHQNEDKIYGTLRGRGPSRFLVKLDITNLKCMLCSANVDSLEDLFVHLTEKHNKNFHTDIRNQIFPFKFDTKQLKCYQCTSDVIFATFSALHEHMHKHYRHFVCNECDAGFINHISLASHRVTHTKGTFTCRHCPVVFDNVFKRKNHEMRSHSKAGKLHICHFCNEGFKEYVTKELHLTTVHGVAPRKYNCSACDRSFASNSFLSAHVRSFHLMEKSHKCSQCDKEFFREAHLKKHKLSHIEATDLICEVCSKHFANKSSLSRHMDEQGNVATAPKIKIELTAEETVVPQEEHIKINPESAPRPRIKRLLHKHLHNLKIILESTNATMILKHGDKGYLCCYCTEAFQEPMNLKVHTLTEHQNAEIFYGNVKARGPARFLVKLDITNLKCKLCSANIDSLEDLFVHLTDKHNKNFHTDIQNQIFPFKFNTKELKCYQCTSDVVFATFSALHEHMHKHYRHFVCNECDAGFINHISLSRHGVIHTKGTFVCRHCSVVFDNVFKRRNHEMGSHKKPGKLNKCHFCNEGFKDYITKELHLSTVHGVAPQKHNCTACDRSFPSNSFLSAHVRRFHLMEKRHKCFECNRAFFRGGDLKKHMLIHTGAKDFKCVVCSKYFAKKSTLNQHMRIHNNDRRFKCTICDQAFVQKPSLTWHMRAKHEDACDQQRTVEEKETDGNDLMENIDEKELKITPRTELLKHRSNIKEVLLNSNATPVRRYGGIGYTCCYCPDQFERPADLKKHTLENHRNVSEANFMKNMNMSEYIVKLDITSLKCKLCDSNMNTLDNLIDHLQSVHEKKIYKNHVNHIFPFKFGNDLLICNICSNTFSKFRTLVRHMHIHYRNYICTVCDTGFANRNSLTQHLVNHKTGEFVCDYCPKFYPTLVKKRMHERTSHTHVDATYKCGYCQETFKDHGQKEAHVTSEHGVVSLKSVCQACNKVFPNRKKLNIHVKRDHLMERPHKCKECDMSFYSTTGLKSHMVKHTGLKEFQCSVCLKKYGRKKTLNAHMQTHSEEKRFKCEKCAQKFTQKCTWRGHMRSKHAEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00121666;
- 90% Identity
- -
- 80% Identity
- -