Basic Information

Insect: Gonocerus acuteangulatus
Gene Symbol: -
Assembly: GCA_946811585.1
Location: CAMPFD010002024.1:32958-37443[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.25 1.7e+03 1.1 0.3 27 48 77 98 73 101 0.87

2 15 0.0006 4 9.5 0.5 21 48 100 127 95 133 0.86

3 15 0.089 6e+02 2.5 0.1 19 48 127 156 124 160 0.88

4 15 0.039 2.6e+02 3.7 0.9 20 48 157 185 153 186 0.75

5 15 5.6e-05 0.38 12.8 0.4 17 48 183 214 182 220 0.82

6 15 0.036 2.4e+02 3.8 0.1 19 48 214 243 211 250 0.78

7 15 0.46 3.1e+03 0.2 0.1 20 48 244 272 241 277 0.81

8 15 0.00078 5.2 9.1 0.2 18 48 271 301 263 305 0.87

9 15 0.02 1.3e+02 4.6 0.2 19 48 301 330 298 335 0.85

10 15 0.0032 21 7.2 0.5 23 48 334 359 328 364 0.86

11 15 0.00016 1.1 11.3 1.4 17 49 357 389 356 394 0.82

12 15 0.0013 8.9 8.4 0.3 20 48 392 420 386 425 0.87

13 15 0.019 1.3e+02 4.6 0.5 20 48 421 449 418 453 0.87

14 15 0.018 1.2e+02 4.8 0.1 17 48 447 478 447 484 0.81

15 15 0.91 6.1e+03 -0.7 0.1 20 48 479 507 475 508 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.25	1.7e+03	1.1	0.3	27	48	77	98	73	101	0.87
2	15	0.0006	4	9.5	0.5	21	48	100	127	95	133	0.86
3	15	0.089	6e+02	2.5	0.1	19	48	127	156	124	160	0.88
4	15	0.039	2.6e+02	3.7	0.9	20	48	157	185	153	186	0.75
5	15	5.6e-05	0.38	12.8	0.4	17	48	183	214	182	220	0.82
6	15	0.036	2.4e+02	3.8	0.1	19	48	214	243	211	250	0.78
7	15	0.46	3.1e+03	0.2	0.1	20	48	244	272	241	277	0.81
8	15	0.00078	5.2	9.1	0.2	18	48	271	301	263	305	0.87
9	15	0.02	1.3e+02	4.6	0.2	19	48	301	330	298	335	0.85
10	15	0.0032	21	7.2	0.5	23	48	334	359	328	364	0.86
11	15	0.00016	1.1	11.3	1.4	17	49	357	389	356	394	0.82
12	15	0.0013	8.9	8.4	0.3	20	48	392	420	386	425	0.87
13	15	0.019	1.3e+02	4.6	0.5	20	48	421	449	418	453	0.87
14	15	0.018	1.2e+02	4.8	0.1	17	48	447	478	447	484	0.81
15	15	0.91	6.1e+03	-0.7	0.1	20	48	479	507	475	508	0.78

Sequence Information

Coding Sequence: ATGTTTTCAGGGATTGTGAAGGAGGAGCCTGAACTTGACTTTCCTGCAGAAATTGGAGTACTCCAAGGTATTGGAGAGAGGACTTTGGATGATGTAAAGGAAGATCCGGAGCTAGATGATCCATTGGAAATTGGGCTCGGAGATTATGCATTGTCAAAAGTGAGAGAGAACCCTGAAGAATCTGAAACTAATCATGTTATTGGCACTGATTTGTACAAGCGTCACTTCTGCCCCCATTGTGGCTATACTACAGCTTATACTAATAGTTTAAAGAGACACATCAAATGTAAACATAGTAATAACAAGCCTTACTCCTGCCCTCATTGTGTCTTCTCTACAGCTTATTCTAAGAACATCAAAAGACACATTATTTCCAAACACAGTAATGACAAACCTTTTTCCTGCTCGCATTGTGAGTTCACTACTGCTTATTCTATGAGTTTAAAGAACCACTTAATTTCTAGACATAGTAATTACAAAACTCACTCCTGCCCTTATTGTGACTATGCTGCAATTCAGTATCATAACTTAAAGTTGCACATTATTTCTAAACACAGTAGTGACAGACCTCACTCCTGCCCTCATTGTGACTATGCTACGGTTTATTCTAAAAATCTAAAGAAGCACATTGTCTCTAAACATAGTAATAACAAACCCCATTCCTGCTCAAATTGTGACTATGCTACAGTTTATTCTAAAGATCTAAAGAAGCACATTGTCTCTAAACATAGTAATAACAAACCCCATTCCTGCTCACATTGTGACTTCACTACGGCtcatattataaatatgaagaATCACATTATCACTAGACATAGTAATGACAAACCTCACTCTTGTCCTCATTGCGAGTATGCAACTGCGTATtctgaaaatttaaagaaacacATCATCTCTAAACATAGTGATGATAAACCTCACTCCTGTCCTCATTGTGACTTTACTACAGCTCATTCTAGTAGTTTGAAGAATCACATTATCGCTAAACATAGTAATTACAAACCTCACCCTTGTCCTCATTGCGAGTATGCAACTGCGTATtctgaaaatttaaagaaacacTTTATTTCTAGACATAGTAATTTCAAACCTCATTCCTGCCCTCATTGTGAATATGCAACTGTGTCTTCCGTAAATTTAAGGAAACACATTATCTCTAGACATAGTGATGAAAAACCTGATAAACCACACTCCTGTCCCTATTGTGACTTCATTACAGCTCATCCTTGGAACATAAAGAAACACCTTATTAATAGACATAGAAATGACAAATCCCACTCCTGCCCACATTGTGAGTTCACTACAACTTATTCTCAGAGTTTGAAGAACCACCTCATTTCTAGACATAGTAATGACAAAACTCACTCCTGCCCCTATTGTGACTACGCTTCATTTCTTTCCGGAAATTTAAAGAAACATATTATCTCTAAACATAGTAAAGACAAACCTCATTCTTGTTTTCATTGTGACTATTCTACAGTTTATTCTCATCACTTGAAGAAACACATCATCTCGAAGCATAGTAATGACTAA
Protein Sequence: MFSGIVKEEPELDFPAEIGVLQGIGERTLDDVKEDPELDDPLEIGLGDYALSKVRENPEESETNHVIGTDLYKRHFCPHCGYTTAYTNSLKRHIKCKHSNNKPYSCPHCVFSTAYSKNIKRHIISKHSNDKPFSCSHCEFTTAYSMSLKNHLISRHSNYKTHSCPYCDYAAIQYHNLKLHIISKHSSDRPHSCPHCDYATVYSKNLKKHIVSKHSNNKPHSCSNCDYATVYSKDLKKHIVSKHSNNKPHSCSHCDFTTAHIINMKNHIITRHSNDKPHSCPHCEYATAYSENLKKHIISKHSDDKPHSCPHCDFTTAHSSSLKNHIIAKHSNYKPHPCPHCEYATAYSENLKKHFISRHSNFKPHSCPHCEYATVSSVNLRKHIISRHSDEKPDKPHSCPYCDFITAHPWNIKKHLINRHRNDKSHSCPHCEFTTTYSQSLKNHLISRHSNDKTHSCPYCDYASFLSGNLKKHIISKHSKDKPHSCFHCDYSTVYSHHLKKHIISKHSND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00757543;
90% Identity: iTF_00757543;
80% Identity: iTF_00757543;