Gacu033345.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- -
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010001917.1:220619-236505[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.057 3.8e+02 3.1 0.6 23 49 244 270 233 276 0.83 2 10 0.094 6.3e+02 2.4 0.6 18 48 268 298 267 303 0.74 3 10 0.052 3.5e+02 3.3 1.4 18 48 297 327 295 328 0.85 4 10 0.0031 21 7.2 0.3 16 48 324 356 312 359 0.86 5 10 3.6e-06 0.024 16.6 0.2 20 49 357 386 353 391 0.88 6 10 0.003 20 7.2 0.1 17 49 414 446 411 451 0.85 7 10 0.0017 11 8.1 0.4 18 48 473 503 468 505 0.86 8 10 0.00025 1.7 10.7 1.2 16 48 500 532 498 537 0.89 9 10 0.66 4.5e+03 -0.3 0.1 22 45 535 558 530 563 0.73 10 10 2.5e-06 0.017 17.1 0.2 17 48 559 590 557 591 0.89
Sequence Information
- Coding Sequence
- ATGGCTGGTAGAGGGGGTAATAGACCCGTAGATTACAGGGCGGTAACTTGGGGCTCTCGCCTCGGGTACAGTCCCTGGGAGGAGTGGTTCTTCAAGGGTGGAAGAGGACTGTACCGTAGCGGATTCTCTGATCAGTGGGTTCGCTCGTCCGTCGGAGGACGGGGGGATCGGCCGGAAGCTGCTGACAATATTCTTGAGGTTGTTATCAAACAAGAAGACTCTGCTGTAGAGGAAGTTCATTCGTCAAACTCAGGGCTCGAGGATACTTATATGGAAGTAAAAGAGGAGTCTCAGCTAGATTCAGAGGAAGAGATAGAACACTTTGAAGGGGCTGGAGAATCATACGTATTTATCAAAGAGGAGCAGCTGATAGATTACGAGGAAGAGACTGATCCTTTTGAAGAGATTGATGCCGCAGACAATGTTGAGATTGTTATCAAATCCAAAGAAGACGATATTACAGAAGAAGTTCATCCATCAACCTCCGGCATTCCTTCTCCAGAAGCAGAAGATTTACCTATACCCGATTCTGAAGTGTCCGATTCTGAAAGTGACCTTGAGACCGATAAATTGTCTAAGGAAAATCAGACATTGCctacagataaaaataaaaaaacaatatattcctGCATTCACTGCATTTATAAAACACccattttaaagaatttaacCATTCATCTTACTTCTAAACATTCTGACATTAAAAATAGTACATCTACTACTAAGTACAAACCATACTCATGTCCTCATTGCGATTACACTGCAGCATTTCCTCATCACTTAAGAGGTCATATCACAGCTAGACATACCAATAACAAACCCCACGCCTGTCCACATTGTAGTTACAGTACAGTTCATCAAAACGATCTAAAGCTTCATATATTGTCTAAACACACTAATGACAAACCCCACTCTTGTCCTCATTGTAGTTACAGAGCAGCACGTGCTAAGGCATTAAAGCATCACATCTGGTCGAGACACAGTAGCGAAAAACCATACCCTTGCCCTGACTGCGATTTTAGTACAGTTGGGTCTAATCAATTAAAGATACATATCATGACCAAGCACACAAACGAGAAACCACACACTTGTCCTCATTGTGATTATGGGACAGCGGAAGCACGTAATTTAAAACGTCACATAATGGCTAAGCACACAAATGACAAACCTTACTCGTGTCCTCACTCCGATTGCAATTACAGTTCAGTTCAACCTTATTCCTTAAAACTTCATATCACTTCTAAACATACTAATGACAAACCTTACAGCTGCCCTCATTGTAATTACAGTGCTGTCTATTCAAGGACTTTGAAGCTCCATATTATGTCTAAGCATATGAATGTCAAACCCTTTTCGTGTACTTACTGTGATTACAGTTCGGTGACATTTCAAGATGTAAAGCATCATGTCATGGCTAGGCATACCTTTGACAAACCTCATACCTGTCCTCATTGTGAATACAGTGCTGTTGGGTCTCAACAATTAAAGCTCCATATCAAGTCGAGGCATACCAACGAGAAACCTCATTCTTGCCCTCATTGCACTTACAGTGCAGTTCAATCTCATGCTTTGAAGCTTCATATTTTGGCTAAACATACCAAGGACAAACCTTATTCCTGCCCTCATTGTAATTTTAGTACAGTTCATGCTAATTCGTTAAAACTCCACATATTGTCAAAGCATACTAATGAGAAACCTTACTCTTGTCCTAGTTGTGAGTACAGTACAGTTGAGACTCGTAATTTAAAACGTCACGTTATGTTAAAACATATGTAG
- Protein Sequence
- MAGRGGNRPVDYRAVTWGSRLGYSPWEEWFFKGGRGLYRSGFSDQWVRSSVGGRGDRPEAADNILEVVIKQEDSAVEEVHSSNSGLEDTYMEVKEESQLDSEEEIEHFEGAGESYVFIKEEQLIDYEEETDPFEEIDAADNVEIVIKSKEDDITEEVHPSTSGIPSPEAEDLPIPDSEVSDSESDLETDKLSKENQTLPTDKNKKTIYSCIHCIYKTPILKNLTIHLTSKHSDIKNSTSTTKYKPYSCPHCDYTAAFPHHLRGHITARHTNNKPHACPHCSYSTVHQNDLKLHILSKHTNDKPHSCPHCSYRAARAKALKHHIWSRHSSEKPYPCPDCDFSTVGSNQLKIHIMTKHTNEKPHTCPHCDYGTAEARNLKRHIMAKHTNDKPYSCPHSDCNYSSVQPYSLKLHITSKHTNDKPYSCPHCNYSAVYSRTLKLHIMSKHMNVKPFSCTYCDYSSVTFQDVKHHVMARHTFDKPHTCPHCEYSAVGSQQLKLHIKSRHTNEKPHSCPHCTYSAVQSHALKLHILAKHTKDKPYSCPHCNFSTVHANSLKLHILSKHTNEKPYSCPSCEYSTVETRNLKRHVMLKHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00757592;
- 90% Identity
- iTF_00757592;
- 80% Identity
- iTF_00757592;