Gacu034538.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- -
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010002024.1:77877-79076[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0018 12 7.9 0.6 20 48 17 45 2 49 0.83 2 13 0.012 78 5.4 0.1 26 48 52 74 46 76 0.87 3 13 0.022 1.5e+02 4.4 0.1 19 48 74 103 71 109 0.83 4 13 0.91 6.1e+03 -0.7 0.0 22 48 106 132 100 134 0.82 5 13 0.00049 3.3 9.7 0.5 17 48 130 161 117 166 0.88 6 13 5.7e-05 0.38 12.7 0.3 21 48 163 190 158 193 0.86 7 13 0.0078 53 5.9 0.6 17 47 188 218 187 221 0.75 8 13 0.0003 2 10.4 0.1 17 48 217 248 215 253 0.87 9 13 8.3e-05 0.56 12.2 0.2 18 48 247 277 245 281 0.88 10 13 0.014 95 5.1 0.1 17 48 275 306 273 311 0.86 11 13 0.0069 46 6.1 0.1 22 48 309 335 304 340 0.82 12 13 0.011 76 5.4 0.2 18 49 334 365 332 369 0.76 13 13 0.019 1.2e+02 4.7 0.1 23 45 368 390 361 396 0.84
Sequence Information
- Coding Sequence
- ATGAGCACGCATCCTGAAGAATCTGAAACTATTGAAGGTACCAAAAATACAGCGGTAAAGCCTCACTCATGCCCTAATTGTGACTATTGTACAGCTTATTCTCATAACTTGAAGAAACACATCATCCATAAACATAGTAATGTAAATTCTGAGTCTTGTCCTCATTGTGACTTTTCAACAGTTTATTCAGAAAACTTAAGGAAACATATTCTCTCGAAACATAGTGATGACAAACCTCACTCTTGTCCTTATTGCGACTATAGTACAGGTTATTCTCAAGCCTTAAAGAGTCACATCATCTCAAAACATAGTAATTACAAACCTTACTCTTGCCTTCATTGTGACTATGAAACACATCATTCtcaagttttaaaaaaacatatcgCTTCAAAACATAATGGTGACAAACCTCACTCTTGCCCTCATTGTGACTATAGAACAGGTTACTCTCGAAACCTACAGAACCACATCATCTCAAAACATAGTAATTACAAACCTCACTCTTGCCCTCATTGTGACTATTCAACTGTGCAATCTAAAAACTTAAAGAATCATATCATCTCGAGACATAGTAATGACAAACCTCACTCTTGCCCTTTTTGTGACTATGCTTCAGCTCGTTCTGATTACATAAAGCAACACATCATCTCGAAACACAGTAATGAAAAACCTCTGTCCTGCCCACATTGTGACTACTCTACAGGTATTTCACAAAACTTTAGAAAACACATGATCTCGAAACATAGTAATGACAAACCTCACTCATGCCCTCAGTGTGACTATGTAACACATAACTCTCGagctttaaaaattcatatcaGCTCTAAACATAATGGTGACAAACCTCACTCCTGCCCTCATTGTGACTATAGTTCTGGTTATTCTCAATCCTTAAAGAAACACATCATCTCAAAACATAGTAATTACAAGCCTCATTCTTGCCCTCATTGTGACTATTCAACAGTTGAATCTGGAAACTTAAAGAATCATATCATCTCAAAACATAGTAATGACAAACCTCATTCTTGCCCCCATTGTGATTATGCTACAGTTATATATCACGATTTAAATAAACACATCAGCTCTAAACATTATGGTGTTAAACCTTACTCCTGCCCACATTGTGACTTCACTACAGCTTATTCTAGGAGTTTGAAGAACCATATTTTCTCTATACATAGTAAAAAGTACATACCATGA
- Protein Sequence
- MSTHPEESETIEGTKNTAVKPHSCPNCDYCTAYSHNLKKHIIHKHSNVNSESCPHCDFSTVYSENLRKHILSKHSDDKPHSCPYCDYSTGYSQALKSHIISKHSNYKPYSCLHCDYETHHSQVLKKHIASKHNGDKPHSCPHCDYRTGYSRNLQNHIISKHSNYKPHSCPHCDYSTVQSKNLKNHIISRHSNDKPHSCPFCDYASARSDYIKQHIISKHSNEKPLSCPHCDYSTGISQNFRKHMISKHSNDKPHSCPQCDYVTHNSRALKIHISSKHNGDKPHSCPHCDYSSGYSQSLKKHIISKHSNYKPHSCPHCDYSTVESGNLKNHIISKHSNDKPHSCPHCDYATVIYHDLNKHISSKHYGVKPYSCPHCDFTTAYSRSLKNHIFSIHSKKYIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00757541;
- 90% Identity
- iTF_00757541;
- 80% Identity
- iTF_00757541;