Gacu026980.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- bab1
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010001481.1:394741-412027[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-16 1e-12 49.4 0.0 1 43 139 182 139 184 0.95 2 2 3.2 5.5e+03 -1.0 0.1 5 18 312 325 309 326 0.83
Sequence Information
- Coding Sequence
- ATGGGCACCCTTAGAAATTGGATAGCTATAGCACATGCCAGATCCAAGAAAGGCAAATTAAAATCAGTGCCCCACAAGATCCCGAAAACCATTAAACTCTTAGAACAATGGACCTGTTGCGCGATGCCTCTTCTTCACCAAGAAGAAGATAATTTTCCCGAACAAGCCCTTACTATTGAGGAGGCCGAGCTGGAAGTGGGGTGTATTTCTAGCTGGTCATCAGCTGATGCTATCTCCATCCGCACAGCGAAGATGCTTGAATCTTCACATGCATGGCTTGGAGCATCGACTTCATCATTGGCGGCAGATAGCTACCAGTACCAGCTCCAGTCCATGTGGCAGAAGTGTTGGAACACGAATCAGAGCTTGGTACACAACCTGAGGTTTCGAGAGCGAGGACCGCTCAAGTCGTGGAGACCGGAGACGATGGCCGAAGCGATACTCTCCGTCCTGAAGGAAGGTCTATCGCTGTCGCAGGCCGCTAGGAAGTACGACATCCCTTATCCGACATTTGTGCTCTATGCCAACAGGGTACACAACATGCTCGGGCCCTCTGCTGACGGAGGATCAGATCTGAGGCCCAAGGGACGAGGTAGGCCCCAGAGAATTTTGCTTGGAATCTGGCCTGAAGACCACATCCGAGGAGTGATCCGAGCTGTAGTCTTCAGAGATCCTCAGCACATGAAGGACGAAGCCCTCAATCTTGGCTATCATCGCTTGCCTAAATCTCAGCTTTGCACTCCAGACAGCGTTCACAGCTACGGAAGTGGAGGAGGTAGCGGAGGAGGTGGAAGCAGCGGCCCTGGTTCCGTTACTGATTCAGTGTCTCCTAATTCTGCAGCAGCCGCTGTCGTGGCTGTAGCACAAAACCTGAGGCAGCAGATGCTTGCTGCAGCTCACCACCATGAGCAGCATCCACAGTTTCCTGGTTTCCTAGCTGCTGCTGCAGCACACTGCGGGAATGGTGCTGCTTCTCTCATGCTCCACTCCCCTAGCCCGGTCGATTCTTCCCCGAGATCTTCTCCTCTAACTCAGCCTAATAACAATATGGAGATGGCCATGAATATGGGATATAAACCTATGGTGAACGATTCCATGACACAAAGGCCGAATGAACATTTATTTCAAGACGATATCGAAGATCTGGTGAAAAGACCACAGTCAAGTGAAACTCCAAAAATGAagCCTCAACCAATGGTCTACAAACCAATGCCTAATGACCTTTCAACTAGAGCTGATCACCTATTCCAAGACGAAATGGATTTAATGAAGCGCCCTCAACAACAGGAACCACCCAAAGTTAAGgtGGGTATAGGCGTTAGTGGGATGGCATACAAAGGAGGATGTGAAAACTATGGGCCCCCTCGTTCAGACTCACTTCTCCAGGATGAGTTTGAAAACCTTGTGAAGAGTCCACCTCAGCCGCAGCAGAAAGAGCCTATCCACATGTCAGTAGACCAGCGTACAGAGTAA
- Protein Sequence
- MGTLRNWIAIAHARSKKGKLKSVPHKIPKTIKLLEQWTCCAMPLLHQEEDNFPEQALTIEEAELEVGCISSWSSADAISIRTAKMLESSHAWLGASTSSLAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGIWPEDHIRGVIRAVVFRDPQHMKDEALNLGYHRLPKSQLCTPDSVHSYGSGGGSGGGGSSGPGSVTDSVSPNSAAAAVVAVAQNLRQQMLAAAHHHEQHPQFPGFLAAAAAHCGNGAASLMLHSPSPVDSSPRSSPLTQPNNNMEMAMNMGYKPMVNDSMTQRPNEHLFQDDIEDLVKRPQSSETPKMKPQPMVYKPMPNDLSTRADHLFQDEMDLMKRPQQQEPPKVKVGIGVSGMAYKGGCENYGPPRSDSLLQDEFENLVKSPPQPQQKEPIHMSVDQRTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00154420;
- 90% Identity
- iTF_00715020;
- 80% Identity
- -