Gacu050105.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- -
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010003781.1:58302-68206[+]
Transcription Factor Domain
- TF Family
- Homeobox
- Domain
- Homeobox
- PFAM
- PF00046
- TF Group
- Helix-turn-helix
- Description
- This entry represents the homeodomain (HD), a protein domain of approximately 60 residues that usually binds DNA. It is encoded by the homeobox sequence [7, 6, 8], which was first identified in a number of Drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [1, 2], as well as plants [4], fungi [5] and some species of lower eukaryotes. Many members of this group are transcriptional regulators, some of which operate differential genetic programs along the anterior-posterior axis of animal bodies [3]. This domain folds into a globular structure with three α-helices connected by two short loops that harbour a hydrophobic core. The second and third form a helix-turn-helix (HTH) motif, which make intimate contacts with the DNA: while the first helix of this motif helps to stabilise the structure, the second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA. One particularity of the HTH motif in some of these proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the β-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.24 2.1e+02 3.7 0.0 38 54 89 105 85 107 0.88 2 15 1.1 1e+03 1.5 0.0 34 54 135 155 125 157 0.87 3 15 0.38 3.4e+02 3.0 0.0 38 54 189 205 178 207 0.88 4 15 0.2 1.7e+02 3.9 0.0 34 54 265 285 255 287 0.87 5 15 0.16 1.4e+02 4.2 0.0 34 54 315 335 298 337 0.87 6 15 0.15 1.4e+02 4.3 0.0 34 54 365 385 346 387 0.86 7 15 1.1 1e+03 1.5 0.0 34 54 415 435 406 437 0.87 8 15 0.37 3.3e+02 3.0 0.0 38 54 549 565 536 567 0.88 9 15 0.34 3e+02 3.2 0.0 38 54 599 615 585 617 0.86 10 15 0.38 3.3e+02 3.0 0.0 38 54 649 665 637 667 0.88 11 15 0.19 1.7e+02 4.0 0.0 34 54 695 715 686 717 0.87 12 15 0.1 90 4.8 0.0 34 54 745 765 737 767 0.88 13 15 0.19 1.7e+02 4.0 0.0 34 54 795 815 786 817 0.87 14 15 0.17 1.5e+02 4.1 0.0 34 54 845 865 831 867 0.88 15 15 0.38 3.4e+02 3.0 0.0 38 54 899 915 888 917 0.88
Sequence Information
- Coding Sequence
- ATGTCCCCGCCCCTCCAGGAATTATGTGGCATTCCAGTTTCGAACTCGCCGATGAGAGGTTCGGTCGTAACTTTCGTCGCCGTGAAAGTGTTCGTCCACCGAGAGGCTACCTACAGCCACACGCCAGTGGACGTGGAGGGGATGGACGCGTGCGCCAAGCTGCATCCTACATCTTTAGGGGCCTACAAAAACGGCCCTTGCCTTGGGGGTGTGGTCCGTGCATTCCTCGATCTTCTAGAATTAATAGTCCCACCAAAGAAGCAAGGCCTAACATCGAATCACACATTCACGTACTTTCAGCATCGTAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCAAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCAAAGAAGCAAGGCCTAACATCGAATCACACATTCACCACCGAAGAAGCAAGGCCTACCATCGAATGACACAATCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACTATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAGTCACACATTCACGTACTTTCAGCACCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACATACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCGTAGAAGCAAGGCCTACCATCGAATCACAAATTCACGTACTTTCAGCATGGAAGAAGCAAGGCCTACCATCGAATCACACATTCACATACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCGAAGAAGCAAGGCCTACCATCGAGTCACACATTCACATACTTTCAGCACCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCAAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTCTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCAAAGAAGCAAGGCCTAACATCGAATCACACATTCACCATCGAAGAAGCAAGGCCTACCATCGAGTCACACATTCACGTACTTTCAGCACCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACATACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCGTAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATGGAAGAAGCAAGGCCTACCATCGAATCACACATTCACATACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCGAAGAAGCAAGGCCTACCATCGAGTCACACATTCACGTACTTTCAGCACCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACATACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCGAAGAAGCAAGGCCTATCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAACAAGGCCTAACATCGAATCACACATTCACATACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACATACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTAACATCGAATCACACATTCACATACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCACCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTACCATCGAATCACACATTCACGTACTTTCAGCATCGAAGAAGCAAGGCCTATCATCGAATCGAACATTGATAAGTATCCCATAA
- Protein Sequence
- MSPPLQELCGIPVSNSPMRGSVVTFVAVKVFVHREATYSHTPVDVEGMDACAKLHPTSLGAYKNGPCLGGVVRAFLDLLELIVPPKKQGLTSNHTFTYFQHRRSKAYHRITHSRTFSTEEARPTIESHIHVLSASKKQGLPSNHTFTYFQHQRSKAYHRITHSRTFSIEEARPTIESHIHVLSAPKKQGLPSNHTFTYFQHRRSKAYHRITHSRTFSTKEARPNIESHIHHRRSKAYHRMTQSRTFSIEEARPTIESHIHVLSASKKQGLPSSHTFTYFQHRRSKAYHRITHSRTFSTEEARPTIESHIHILSASKKQGLPSNHTFTYFQHRRSKAYHRITNSRTFSMEEARPTIESHIHILSASKKQGLPSNHTFTYFQHRRSKAYHRVTHSHTFSTEEARPTIESHIHVLSASKKQGLPSNHTFTYFQHQRSKAYHRITHSRTFSIEEARPTIESHIHVLSAPKKQGLPSNHTFTYSQHRRSKAYHRITHSRTFSTKEARPNIESHIHHRRSKAYHRVTHSRTFSTEEARPTIESHIHVLSAPKKQGLPSNHTFTYFQHRRSKAYHRITHSRTFSTVEARPTIESHIHVLSAWKKQGLPSNHTFTYFQHRRSKAYHRITHSRTFSTEEARPTIESHIHVLSAPKKQGLPSNHTFTYFQHRRSKAYHRITHSRTFSIEEARPTIESHIHVLSASKKQGLPSNHTFTYFQHRRSKAYHRITHSRTFSTEEARPIIESHIHVLSASKKQGLTSNHTFTYFQHRRSKAYHRITHSRTFSIEEARPTIESHIHVLSASKKQGLPSNHTFTYFQHRRSKAYHRITHSRTFSIEEARPNIESHIHILSASKKQGLPSNHTFTYFQHRRSKAYHRITHSRTFSIEEARPTIESHIHVLSAPKKQGLPSNHTFTYFQHRRSKAYHRITHSRTFSIEEARPTIESHIHVLSASKKQGLSSNRTLISIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -