Gacu025997.1
Basic Information
- Insect
- Gonocerus acuteangulatus
- Gene Symbol
- RYa-R_1
- Assembly
- GCA_946811585.1
- Location
- CAMPFD010001408.1:27404-54740[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.0097 2.2e+02 4.4 0.0 36 70 134 168 127 170 0.85 2 28 0.028 6.3e+02 2.9 0.0 42 70 172 200 166 206 0.85 3 28 0.023 5.1e+02 3.2 0.0 40 70 202 232 196 237 0.84 4 28 0.012 2.6e+02 4.2 0.0 39 70 217 248 208 252 0.77 5 28 0.016 3.6e+02 3.7 0.0 39 70 233 264 227 268 0.83 6 28 0.05 1.1e+03 2.1 0.0 39 70 265 296 259 300 0.82 7 28 0.041 9.2e+02 2.4 0.0 39 70 281 312 274 317 0.81 8 28 0.14 3.1e+03 0.7 0.0 39 69 297 327 290 331 0.73 9 28 0.12 2.7e+03 0.9 0.0 39 69 313 343 304 350 0.75 10 28 0.043 9.7e+02 2.3 0.0 39 70 329 360 320 365 0.82 11 28 0.014 3.1e+02 3.9 0.0 38 70 344 376 335 380 0.82 12 28 0.043 9.6e+02 2.3 0.0 39 70 377 408 368 410 0.74 13 28 0.041 9.2e+02 2.4 0.0 39 69 393 423 385 426 0.76 14 28 0.13 2.9e+03 0.8 0.0 39 69 425 455 416 459 0.73 15 28 0.14 3.1e+03 0.7 0.0 39 69 441 471 432 473 0.72 16 28 0.053 1.2e+03 2.0 0.0 39 70 457 488 451 491 0.84 17 28 0.014 3.2e+02 3.8 0.0 39 70 473 504 466 507 0.85 18 28 0.051 1.1e+03 2.1 0.0 39 69 489 519 484 522 0.79 19 28 0.018 4.1e+02 3.5 0.0 40 70 506 536 501 541 0.86 20 28 0.0065 1.5e+02 4.9 0.0 39 70 521 552 512 555 0.82 21 28 0.01 2.3e+02 4.3 0.0 38 70 536 568 530 572 0.82 22 28 0.042 9.5e+02 2.4 0.0 39 69 553 583 547 587 0.76 23 28 0.12 2.7e+03 0.9 0.0 38 69 584 615 574 619 0.71 24 28 0.16 3.7e+03 0.5 0.0 39 69 601 631 595 634 0.79 25 28 0.043 9.7e+02 2.3 0.0 39 70 617 648 608 653 0.82 26 28 0.013 2.9e+02 4.0 0.0 38 70 632 664 624 667 0.83 27 28 0.051 1.1e+03 2.1 0.0 39 69 649 679 644 682 0.79 28 28 0.0048 1.1e+02 5.4 0.0 39 69 681 711 661 715 0.68
Sequence Information
- Coding Sequence
- ATGTTCCAGGTATCCGCCTACACGCTGGTGGCTATCAGCGTGGACCGCTACATGGCTATACTCTGGCCCCTAAAGCCCAGGATGTCTAAGAGTGCAGCTAAAGTGATCATGGTTTCTGTATGGTTCGTTGCTCTAGTAACAGCTCTTCCTATTCCCATAGTCTCCACGCTGGACCAGCCATCACTCTGGCACAAGCAGTGTGACAGATGCCTATGTCGAGAGCAATGGTGGTCCCTGGAAGCTGGACAGGCCTACTCCTGGAGCCTACTCAGCCTGCAGTATGTCATACCTCTCATCGTCCTGGTCTACACTTACACATCAATAGCTATAGTAGTCTGGGGGAAGTCTACACCTGGAGAAGCAGAGACTTCTAGGGACCAGCGGATGGCTAAGTCAAAGCGGAAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTACCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCATGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTACCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTACCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTATACTACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTATACTACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTATACTACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTATACTACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTACCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTATACTACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTATACTACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTATACTACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTATACTACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTATACTACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACACTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTACGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTATACTACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTATACTACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTATACTACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTATACTACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACACTCAGTTTCCTATTCTTGCGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTACGTGCCCACGTGTTGGTAGTGTAATACACTCTCAGTTTCCTATTCTTGCGTGCCCACGTGATGAGAACTCCTGTGTTCTAAACATCACCATATGGCGAAGAAGAACAGACCTAGAGGATTCTGTTTGTGAAATTCGATAA
- Protein Sequence
- MFQVSAYTLVAISVDRYMAILWPLKPRMSKSAAKVIMVSVWFVALVTALPIPIVSTLDQPSLWHKQCDRCLCREQWWSLEAGQAYSWSLLSLQYVIPLIVLVYTYTSIAIVVWGKSTPGEAETSRDQRMAKSKRKFPILACPRVGSVIHSQFPILACPRVGSVIHSQFPILAYPRVGSVIHSQFPILACPRVGSVIHSQFPILAYPRVGSVIHSQFPILACPRVGSVIHSQFPILACPRVGSVIHSQFPILAYPRVGSVIHSQFPILACPRVGSILHSQFPILACPRVGSVIHSQFPILACPRVGSILHSQFPILACPRVGSILHSQFPILACPRVGSILHSQFPILACPRVGSVIHSQFPILAYPRVGSVIHSQFPILACPRVGSILHSQFPILACPRVGSVIHSQFPILACPRVGSILHSQFPILACPRVGSILHSQFPILACPRVGSILHSQFPILACPRVGSILHSQFPILACPRVGSVIHSQFPILACPRVGSVIHSQFPILACPRVGSVIHTQFPILACPRVGSVIHSQFPILTCPRVGSVIHSQFPILACPRVGSVIHSQFPILACPRVGSILHSQFPILACPRVGSILHSQFPILACPRVGSILHSQFPILACPRVGSILHSQFPILACPRVGSVIHSQFPILACPRVGSVIHSQFPILACPRVGSVIHTQFPILACPRVGSVIHSQFPILTCPRVGSVIHSQFPILACPRDENSCVLNITIWRRRTDLEDSVCEIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -