Basic Information

Insect: Goniozus legneri
Gene Symbol: MBD-R2
Assembly: GCA_003055095.1
Location: NCVS01000465.1:192468-199906[+]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.2e-18 3.5e-15 55.0 0.2 8 69 549 610 543 618 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.2e-18	3.5e-15	55.0	0.2	8	69	549	610	543	618	0.92

Sequence Information

Coding Sequence: ATGAAGCGGCGGCGTATAACGCGGTCGCGTGCTGCTACGACTGGCGAGTTAGTGCCGCCTGCCAAGACGGGAATGGCGCGCAAATGTTGCGTGCGTAGCTGCGAGGCCGACGTACAGGAGGCACGAGTTCGTGGCTTGCCGTTACACAAGTTCCCGAAGGATCCGGCCTTAAGGTCTAAGTGGCTGTCAAGTGGCGGATTCGATCCGAATTTCAAGCCGACGTCCGGTCAGGTAGTTTGCCACAAGCATTTCAAACGAGCCGACTACGAAGCCGCTACGAAGGGTAACAAGTTAATGCTGAGGAAAGGCAGCGTACCATCGGTATTCGCTGATTATGACAACCATCCAGaTCCTGTAATCATGTCTGTTAAGTCTACGATTTCCTATGCGCAAGAAGACCTTGATCTTATTAATTCAGAGATTATGAATATGGGACAATCCGCATCTCCCTCGTTGTCCGAAGTAAGGACGCCAAAATCAGACAGTTGTGGGGAACAAATTTATTCTAGACCAGTATCATCTGTAGAATCGGTTAATACATCAGATCAAGCTGATTTAGGCGATGTTCATAATAAGTTATCAGAACAAATTGGAGAATCTACAACTCGTGTTAAATTAGAATTAGAAAACGAAGAGATTAAAGTTAATTCAATGGCAGTACAGTTAGGAATTATGGAACCTCAGGGAGTTTTGGAGAATGTTTCTCAAGATCTGATTATCAAAGAAAATCTGAAAGATTGTAAAGTTTCagaagacaaaaaatttgacaattctGATGTTTTAAAGCCTAAAGTAGCTAATGTAGGAGGCATTAAGTTCTTTCCTGGGGCTAAACTGGAAGCCAAGGACTTTAATGATAAATGGTACACTGCCAAAGTTGTTGAAACCGATTGGGATGATAGAGAAGTATTAGTACATTTTGACAAATATAATTCAAGTGTTGACGAATGGATTCCAATGGATAGTTCTCGACTTCGTACATTTCAAGTACATACTAACGAACAAGATTGGGAACTACCTTCTATAGacacaaaaattaaaggaTTTTCTGTTGGAGAAAGGATTCTTGCCACCTGGGCTGATGGTAGAAAATACCCAGCCAAAGTGAACGCTGTTTTAGGCAACGacAGGTACGACGTATTATTCGACGATGGATACGCCAAAGTTGTCAAGTCTTCGAAGATGACCAAAATAGTTGCGACACCCTCAAAGGAAGAATCAAGCCAGGGAGACAATTATATAGGAAGTAAACAAGAGAGGCGAGATAAGAAACGTAAGCATACTATAATGGAATTATTTCATACTCACTCAAGGAAACGTACCAAAGCTGAGAATGAAAAGtctgttaataaaaaagaagatccATTGATTGGTGAAACTTCAGAATATCTTCCAGAAAATAAAGTCGAGTTAGATGGTACATTATTAAGTGCGTGCTACGATCCAGGCACCGATTTATTGAAAGGCTTTGATACCAATGctgcaaaaatgaaaacttacaagaaaagtaaaaaagactTACATAAAAGTGATCCTGATCCTGATGATGATGTTGGTCCAGAGTGGATTGATGGCGAACCGCAAGGAATTGAATCATATATTGTGGATGGCAATGATGgtcCCCGTCGTTCTATTATAGTTCCAGACAAGAGGTTGCCCCCTGGTTGGCAAAAACATTTCACTCAACGTAGAGCTGGTACATCTGCAGGGAAATGGGATGTTCTATTTACTCACAAATCTACTGGAAAAAAGTTCAGgtcaaaaaatgatataaaagcatttttagaaaatcaaGGTGTATTCGATTTCGATCCTGACAAATTTGATTTCTGTATTCATCGCAAGAAAAGAAATAGTAGTAAAATGAAACCAGAAGTTGCCTTTGAAGCgccaaagaaaattaaaacattactTCCTAGAGCAAAAGTACCTCCATCAGCAGAAACCATTTTATCACCATCTGTTAATTTAACTGTTCCTTCGACTGTAGCAACTACACCAATGACTCCAATTACTGACGGCGCTGTGTTTATTGGTGGACTACGTGTGGAAATGGAAGATAGTGCTTACAAATGTCCTAAAGAAGGATGCACCAAaacttttcgaaaagaaaatttattacagaTGCATATAAAGCATTATCATCCAgagtattcaaaatttttggggTCCACACCAAACGTAGCTGATCTTGCATATGCCAGAACAATTGGTGAATCCATTGAAGATGTAATCCCCAAAAAGTCTGTACTCTCAGacaaaatgaacaaaataggGAAGAAGAAATTATTCCCAGAACGATTGCCTACTGGATCTTTGAATTTGCTTCAGCCAGTGTCTCCATCATTACCAACTAACATACTAGCAGACAATGAAGATGAAGGACTTCatagtcaaaaattttctacatctgaaatttcgaaagaagaCGCTTTGAGGGAGGCTATGTCACCCATCTCTAATCACAGTCTTGAAATGGAAGAAGAAAttgagaagaaacgagaaaataaatgtgCCATGTCACCTGGAAGTttattcgatttgaaaattagaGAAGAGAGAACACAAGGGGGAATAAAAACCCTTTTGCCTGTAAGACATACAACTGAAGCACAAAAATTAGATAGAAATAAAGTTTCTGACGAAATTACTCATGTAGAACGCACTAAAAATCAGCGTACTAAAAGAACATTAACAGATTCTCTTACGGAACCACCTTTACGAGGGAAGAAGCGTcatgCTGTACAAGATTTAATGGAAGAATATGGTGATATGGACGAAAGCGCTGTAGATGCAGAGGGACCAACTACTCCTATGTATAGATATAGCCGCCGGAAATCGGATTCAAAGAGTGACGAAAACAGTCAGAATAGTCAACTTACAGATTCTCGACCTGAAAAATGTGATGTTTTGAAAGGGGATACTCCCAAAAGAGATAATAATGTCGATACCGAAgAAGAAGGAGTGATGATGATGATCAATGGAGAAATGGttaaagtcgaaaaattgcgAAGAGAAGAAATCATAAACTGTACATGTGGATATATGGAAGAGGATGGCCTTATGATACAATGTGATTTGTGCCTTTGTTGGCAACATGGTCATTGTAATGCtattgagagagagaaggatgtACCCGAAAAATATGTgtgttttatttgtaaaaattcttttagaCAAAGATCTTCAAAAAAATACTCTCATGATCAAGAATGGATTAAAGAGGGAAAACTTCCTTCGTTACCAAatagaacgaaaaatcaaaatacaataaatgaaCGAACGGCGATGTTAAAAAGGTCGTTTGATTTGGCGAGTGATTTAATACAAATACAGGGAATTCTTCATAGTTTACGGGTGAAAATCAACGTagcaaacaaAAAAGATCATCCAAAACTGTATTTATGGgcaaaaaattggaaaaaaattccaattccAGAACCAAATGTCGAACCGGTACCTGTAATAGAAATCATAAAACCAGTAATAGAAACTCCAGAagtaacaactgaaatatttcaaaattctgatgttaaattcgaacaaaaattgtcCAATATCAAAGAAGAATATGATGAAAAATCTATAGCATCAGATTCagaattgatgaaaattctaGAAGAAGATAGTACACCATCCGATGAGGGTAAGGCATTGAATAAAGATGATGTTGCTGAGAAGAACAAAACGCATATTCTTCTGGATGCGTTAACACGAAATGACGCAAACGATGAAAAGAACGATAAAGAAGTCTCATCTGAAATTAATACAGAGGATACAGTCAATTTAGATAACAATCAACTATTGCAAACGGAAAACACATTAGCCCCACCAACTATATCTACAGCGAACGAGCAAGAACAAAATAGTTTAACCGATGTCCCAAATGATATAACTGCTCCACCGCAACCCATTATTCCAGAACCAGAAGCACCGATCGATCCCCAAGAATGTCGAATGCGATTGTTGGAACACATTGAACATTATCAATGTCACGTTGatacaatattaaataatattgaagCTCAAATCGaagttCTCGAAAATAtggattataaaaattttccaagcgAAGAAGATCAAACCCGTACCAAACAGACTATTCAAATGCTTTTGCGTGATTTAAGTACTGCGCGAAACCTGGCAGCGCTaagctga
Protein Sequence: MKRRRITRSRAATTGELVPPAKTGMARKCCVRSCEADVQEARVRGLPLHKFPKDPALRSKWLSSGGFDPNFKPTSGQVVCHKHFKRADYEAATKGNKLMLRKGSVPSVFADYDNHPDPVIMSVKSTISYAQEDLDLINSEIMNMGQSASPSLSEVRTPKSDSCGEQIYSRPVSSVESVNTSDQADLGDVHNKLSEQIGESTTRVKLELENEEIKVNSMAVQLGIMEPQGVLENVSQDLIIKENLKDCKVSEDKKFDNSDVLKPKVANVGGIKFFPGAKLEAKDFNDKWYTAKVVETDWDDREVLVHFDKYNSSVDEWIPMDSSRLRTFQVHTNEQDWELPSIDTKIKGFSVGERILATWADGRKYPAKVNAVLGNDRYDVLFDDGYAKVVKSSKMTKIVATPSKEESSQGDNYIGSKQERRDKKRKHTIMELFHTHSRKRTKAENEKSVNKKEDPLIGETSEYLPENKVELDGTLLSACYDPGTDLLKGFDTNAAKMKTYKKSKKDLHKSDPDPDDDVGPEWIDGEPQGIESYIVDGNDGPRRSIIVPDKRLPPGWQKHFTQRRAGTSAGKWDVLFTHKSTGKKFRSKNDIKAFLENQGVFDFDPDKFDFCIHRKKRNSSKMKPEVAFEAPKKIKTLLPRAKVPPSAETILSPSVNLTVPSTVATTPMTPITDGAVFIGGLRVEMEDSAYKCPKEGCTKTFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESIEDVIPKKSVLSDKMNKIGKKKLFPERLPTGSLNLLQPVSPSLPTNILADNEDEGLHSQKFSTSEISKEDALREAMSPISNHSLEMEEEIEKKRENKCAMSPGSLFDLKIREERTQGGIKTLLPVRHTTEAQKLDRNKVSDEITHVERTKNQRTKRTLTDSLTEPPLRGKKRHAVQDLMEEYGDMDESAVDAEGPTTPMYRYSRRKSDSKSDENSQNSQLTDSRPEKCDVLKGDTPKRDNNVDTEEEGVMMMINGEMVKVEKLRREEIINCTCGYMEEDGLMIQCDLCLCWQHGHCNAIEREKDVPEKYVCFICKNSFRQRSSKKYSHDQEWIKEGKLPSLPNRTKNQNTINERTAMLKRSFDLASDLIQIQGILHSLRVKINVANKKDHPKLYLWAKNWKKIPIPEPNVEPVPVIEIIKPVIETPEVTTEIFQNSDVKFEQKLSNIKEEYDEKSIASDSELMKILEEDSTPSDEGKALNKDDVAEKNKTHILLDALTRNDANDEKNDKEVSSEINTEDTVNLDNNQLLQTENTLAPPTISTANEQEQNSLTDVPNDITAPPQPIIPEPEAPIDPQECRMRLLEHIEHYQCHVDTILNNIEAQIEVLENMDYKNFPSEEDQTRTKQTIQMLLRDLSTARNLAALS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00756691;
90% Identity: iTF_00756691;
80% Identity: iTF_00756691;