Gqui015784.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- -
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010000312.1:462372-463919[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.6 1.6e+04 -2.9 0.2 22 30 36 44 35 48 0.87 2 8 0.00067 4.3 8.6 0.0 23 48 66 91 59 95 0.84 3 8 0.057 3.6e+02 2.4 0.2 26 44 146 164 139 172 0.85 4 8 0.014 91 4.3 0.1 17 43 164 191 161 198 0.79 5 8 8e-05 0.51 11.5 0.1 17 44 250 277 245 283 0.87 6 8 0.35 2.2e+03 -0.1 0.1 25 48 314 336 303 340 0.76 7 8 0.034 2.1e+02 3.2 0.0 26 50 342 365 338 366 0.88 8 8 0.002 13 7.1 0.1 21 44 365 388 361 394 0.88
Sequence Information
- Coding Sequence
- ATGTCATTGAAGCTTCGCTTCGTCTGTTATTCAAGCGTTTGGCGTGACATATTAGGTTTTTTCGACGAAGCCATCAAGAACACTCACGTGGGAGTTCACTTTGGACAACAACCCGTTCCTTGTAGAGTATGCGGCAGACAATTCGAAAGAAAACAGCATTACTTGGATCATTATGGTACCCATTCCGAAAACAAATATCAGTTCACGTGTACGATATGCCATAAAACTTTTTCTTCCGAAAACAACCTTCAGAAACATCTGTCAAATACCCACGTGATCGAAGCTTTGGAACCTTTTCTCGGCAATAGTTCTACTTCCGCGTCGTCAGGCGAAGTACCTGGAAAACTATACCGGTGCCGGTTTTGCTCGGATGTATTGTCGAGCAGATCGGCTCTGATTGGCCACGAAAGTGTTCATACCGGAAAAAAGGTGCACCAGTGCCCGGTTTGTtggaaaaattgtgaaaaggtCAGCGAACTTGAGAGGCATGCGAGAAGCCACAGCGGCTTGAAACCTTTCGAATGTCCGGTATGTTCGAAAAAATTCGTTCAAAAGGAAGCGTTAAAAAATCACGAGGCCGCAATTCACCGAAAAGAAAGGACTTATAAATGTACACAGTGTCCACAAACCTTCGCTTACCACCCCGGTCTACTGAGGCACCTCAATATTCACAAGGGTGGCGCGCCGTTCAAATGCAAAGTGTGCCCCAAAAGTTTCGCTACAAAGCAATACCTCAAGGATCACCAGTCCACTCATAGCGGAGAGACACCTTTTTCTTGCCCCATTTGTTCCAAGGGCTTCCGTCGCAATGCCAACTTGAACTCTCACATGATATACCACAGAGAAGTCCTTCCTTTTAATTGTACAACTTGCTCGAGAGGGTTCGCCCGGAAGTCGGACTTGAGCAAACACGAAATGAGCCACAGCGAGATAAAATCCTTTCGGTGTTCGGTCTGctccaaatatttcaaatatcaaaacaaCCTTAAAAGTCACGAGATCACTCATGGAGCAGCCAAGGTTTCTTGTTCCATTTGCGGTATGCCTATCAAGGATAAAAGATATTTGGCTCAGCACGAGTTGAGCCACAGTGCCGAACGACCGTTCGAATGCGAGATTTGCAAAAAGACTTTCTTGAAGAAGACAAACTTGACCCGACACATGCGACAACATTCGAAAACCGAATCGAAATAG
- Protein Sequence
- MSLKLRFVCYSSVWRDILGFFDEAIKNTHVGVHFGQQPVPCRVCGRQFERKQHYLDHYGTHSENKYQFTCTICHKTFSSENNLQKHLSNTHVIEALEPFLGNSSTSASSGEVPGKLYRCRFCSDVLSSRSALIGHESVHTGKKVHQCPVCWKNCEKVSELERHARSHSGLKPFECPVCSKKFVQKEALKNHEAAIHRKERTYKCTQCPQTFAYHPGLLRHLNIHKGGAPFKCKVCPKSFATKQYLKDHQSTHSGETPFSCPICSKGFRRNANLNSHMIYHREVLPFNCTTCSRGFARKSDLSKHEMSHSEIKSFRCSVCSKYFKYQNNLKSHEITHGAAKVSCSICGMPIKDKRYLAQHELSHSAERPFECEICKKTFLKKTNLTRHMRQHSKTESK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00755973;
- 90% Identity
- iTF_00755973;
- 80% Identity
- iTF_00755973;