Gqui033587.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- -
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010000293.1:842269-850215[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.011 68 4.8 0.0 23 44 204 224 196 227 0.78 2 4 6.6e-07 0.0042 18.2 0.0 20 48 227 254 221 256 0.90 3 4 0.014 91 4.4 0.1 16 44 276 305 270 315 0.72 4 4 0.015 99 4.2 0.1 20 48 337 365 325 368 0.85
Sequence Information
- Coding Sequence
- ATGAAAAATATATGTAGAACATGCTTAAGCTCTTCTACAAAACTACTTCCACTAAGAAGTGATGATAGTctcgttgaaaaaattgaaattcttaCTTCAGTAAAGATTTCGCTGGATAATAATATATATCCGTCCAAGATATGTGAAGGATGTTCGGAGAATCTCAACAAGTTCTACTGCTTTCGAGAAATCGTAATAAACGCGGACAAGGACTTGAAAAAGATATACAGCAATCCAATCTCCgcttcgaagaaaaaaaaagcgACGTCCGGTCATCTGAATGATGGCGGTAAATGCAAAGGGAAGCTCAGGAAACTGGACGTCAGGTCCAGAAAAGAAAAAACCACAAATATGAAACGAAACGTTGAATGTGAAGTCATTATCAAGGTGGAACCTCTAGATTTTGACGATCCCCTGTCTTGTGAGAAAAATGGTTCAGCTCACGAAGACAATACCGTTTTTAAACAAGAAGACGAGAACACAAGcgaaaacaataatgaaaaaagtgAGAAAACTGGGGAAAAGTGCCGACTCAGGCAATGCGAGGAATGCAACTTAACTTTTGCTTCCTATGCGGAATGGGCCTGtcacagaaaaaaacttcattcGGAACCTGGCATCTGCAACATATGTGGTATAGTTGTTAGGGCGGACCACTTGAAGAAGCATATGCTGGTGCATTCCGAAGGCCCGGTGACATGCCAGATATGTAAGAAAGTATTGAAGAACTCGGGGTCCTTACGAGGGCATTTGATAAGGCATAAAGGTTATAGGTACACTTGTGAGATATGTGGGAAGTGTTCCAATATgaagtccgagtatcacaggcATATGAGGAACCATGAAGATCCGAACACATGCAAAATGATATGCACAATATGCGGCATTCGGGTGGGGAAGCTGAAACGTCACCTTCTCACCCACACAGGGGAACGTCCGTACGTCTGTTTGAACTGCGACAAACGTTTTTCGTCCAAACATGCTCTCAAAGTTCACAGCCGACTGCACACCAACGAAAAACCGTTCAACTGCGAATTTTGTAGCAAGGGATTCGCTCAAAAAGTTACCCTCAAGTCGCATCTTAGGTCCAAACATAATATCGAGAATGACTAA
- Protein Sequence
- MKNICRTCLSSSTKLLPLRSDDSLVEKIEILTSVKISLDNNIYPSKICEGCSENLNKFYCFREIVINADKDLKKIYSNPISASKKKKATSGHLNDGGKCKGKLRKLDVRSRKEKTTNMKRNVECEVIIKVEPLDFDDPLSCEKNGSAHEDNTVFKQEDENTSENNNEKSEKTGEKCRLRQCEECNLTFASYAEWACHRKKLHSEPGICNICGIVVRADHLKKHMLVHSEGPVTCQICKKVLKNSGSLRGHLIRHKGYRYTCEICGKCSNMKSEYHRHMRNHEDPNTCKMICTICGIRVGKLKRHLLTHTGERPYVCLNCDKRFSSKHALKVHSRLHTNEKPFNCEFCSKGFAQKVTLKSHLRSKHNIEND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00756135;
- 90% Identity
- iTF_00756135;
- 80% Identity
- iTF_00756135;