Basic Information

Insect: Gonioctena quinquepunctata
Gene Symbol: -
Assembly: GCA_018342105.1
Location: JAFIRS010000617.1:30908-39600[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.3e-05 0.15 13.3 0.0 21 44 208 231 200 240 0.86

2 9 0.0059 38 5.6 0.0 22 46 265 289 261 297 0.78

3 9 3.5 2.2e+04 -3.3 0.1 24 38 420 434 418 442 0.74

4 9 2.1e-05 0.13 13.4 0.0 21 46 479 504 470 512 0.85

5 9 0.035 2.2e+02 3.1 0.3 22 38 536 553 531 564 0.73

6 9 0.32 2e+03 0.0 0.1 24 47 597 620 594 625 0.83

7 9 0.0044 28 6.0 0.1 22 41 623 642 619 652 0.76

8 9 1.7 1.1e+04 -2.3 0.0 27 45 677 695 671 702 0.77

9 9 0.13 8.3e+02 1.3 0.3 22 43 700 715 696 727 0.62

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.3e-05	0.15	13.3	0.0	21	44	208	231	200	240	0.86
2	9	0.0059	38	5.6	0.0	22	46	265	289	261	297	0.78
3	9	3.5	2.2e+04	-3.3	0.1	24	38	420	434	418	442	0.74
4	9	2.1e-05	0.13	13.4	0.0	21	46	479	504	470	512	0.85
5	9	0.035	2.2e+02	3.1	0.3	22	38	536	553	531	564	0.73
6	9	0.32	2e+03	0.0	0.1	24	47	597	620	594	625	0.83
7	9	0.0044	28	6.0	0.1	22	41	623	642	619	652	0.76
8	9	1.7	1.1e+04	-2.3	0.0	27	45	677	695	671	702	0.77
9	9	0.13	8.3e+02	1.3	0.3	22	43	700	715	696	727	0.62

Sequence Information

Coding Sequence: ATGTCTCCAGCTACCAGGCGCAGCGGAAGGAGCACAACTGCTGCCACAATAATAACCAAAGAAAAAATTGCCAAAAAGGCGAGGAAAGCAAATAATAAAGAATCTACAGCATTATCATTGAGGGTTGCTGCTGTAAAATCCGAACCCGAATCTGACCCGGAATCGAAAGTTGGTGGAGTGAAACTCAAGTGCAATAAAGTCAAATCGGAACCAAATGACATTAAAGACGAACCTGAAGAAGTCTCACTTGAAGAGATCCCAGCTTTATGTTCTCGTAATGTGCGCGTTAAGGAAAAATCCAAGAAAACAAAAAGTAAAGCCAAAAAAGAACATAAATTGATATTTGATCCAGTGGTTATAAAAAGTGATGGCGAGAAATTCAATTTAGTCTCCATTCCAGAGTTTCCAGACATCAACCTTAAAGTTGTGAAACCAGGCAAGCACCCATATCAATGCTATAAATGTTACATGGGCTTCCGTACAAAGAAAGCTTATGATGTCCACACTCCCGTTCACATCCTCCGCAAACAGAAACGTCCCCCACATAGATACCACTGCAATGTTTGTCTCAAGGAGTTCGACAAACTGTGCTACCTCGAAAGACACACTAGGGTTCATACTGGGGAGAAGCCCTGGGTGTGTGACATTTGCAACAATGGATTCCAACAGTCATACAACCTGAAGAAACACCTGCTCACTCATGTCGATCTCAAGCCTTTCCAGTGCAGGTACTGCAAAAAGCAGTTCGCAAGGCCCGATGTGCTGACCAGGCACCTCCTAATCCACTCCAAAGACAAACCTTTCACGTGTTCCGTCTGTCAGAAGAGTTTTATCCGTCAATCGCAACTGAACACGCACTTCAACAAGCATCATCCTGAGGAAAAGTTTGTCAAGTCTGAACCAACCGAAGATCTCCCAGAGTGCGAGGTCATTGTTAATGAGGATGTCAAAGAGAGTGTCCGGACTAAGAGTGAGGTGGGCGATGAGGAAATAACACGTGTGGAGGGTTTTGAGACTGTTTGGGCGAAGAAAGTAAATAATAAAGAAGCTAGGACACTATCACCGAGGGGTGCTGCTGTAAAATCTAAACCGGAATGCGAAGTTTCTGAAGCAAAACCGAAATGCAAGAAAATCAAATCAGAACATAAGTTGATATTCGATCCAGTGGTTGTAAAAAGTGATAGTGGTAAATTCGATTTAGTCTCCATTCCAGAGTTTCCAGACATCAAAATTGAAGTTGTGAGACTAGGCAAGCACCCATATCAATGCCATAAATGTTATATGGACTTCCGTACAAAGAAAGCTTATGATGCTCACACACCCATTCACATCCTCTGCAAACAGAAACGCTTCCCAAATAGATTCCGCTGCAATGTTTGTCTCAGGGAGTTCTACAAAAAGTGCGACCTCAAAAGGCACACTAGGGTTCATACTGGGGAGAAGCCCTGGGTATGTGACATTTGCAACAACAGGTTCCAACAGTCATTCAACCTGAAGAAACACCTGCACACCCACGTCGATCTCAAGCCTTTCCACTGCAGGTACTGCAAAAAGCAGTTCAAAAGGGTTGATGTGCTGACCAGACACCTCCTGACTCACTCTAAAGACAAACCGTTCACGTGTACCATCTGTCAGAAGAGTTTTATCCGTCACTCGCAACTGTACTCACACTTCATGAAGCACCATCCTGAGGAAAAGTTTGTCATGTCTGAACCAACCAAAGACCTCCCAGAGCGTGAGGTCACATTCAACCTGAAGAAACACCTGCGCACCCTCGTCGATCTCAAGCCTTTCCAGTGCAGGTACTGCAAAAAGCAGTTCAGAACGGCCGATGTGCTAACCAGGCACCTGCTGATCCACTCCAAAGACAAACCGTTCACTTGTTCCATCTGTCAGAATGGTTTTATCCGTCAATCGCAACTGAACACGCACTTCGTGAAGCACCATCCTGAGGAAAAGATTGTCAAGTCTGAACCAACCGAAGACCTCCCAGAGTGTGAGGTCACATTCAGCCTGAAGAAACACCTGTGCAGGAAATGCAAAAAGCAATTCAGAAGGGCCGACGTGCTGACCAGACACCTCCTGACTCACTCTAAAGATAAACCATTCACATGTCCCAACTGTCAGAAGGGTTTTATCCGTCACTTGCAACTGGACACGCACTTCAAGAAGCACCATCCCAATGAAAACTTCGTCAAGTCCGAACCCTCCGAAGAATTACCAGAGTGTGAGGTCATTGTCAATGAGGATGTCAAAGGGAGTGTCCGGACTAAGAGTGAGGATGATATCATGTGTAGTGTGTATTGA
Protein Sequence: MSPATRRSGRSTTAATIITKEKIAKKARKANNKESTALSLRVAAVKSEPESDPESKVGGVKLKCNKVKSEPNDIKDEPEEVSLEEIPALCSRNVRVKEKSKKTKSKAKKEHKLIFDPVVIKSDGEKFNLVSIPEFPDINLKVVKPGKHPYQCYKCYMGFRTKKAYDVHTPVHILRKQKRPPHRYHCNVCLKEFDKLCYLERHTRVHTGEKPWVCDICNNGFQQSYNLKKHLLTHVDLKPFQCRYCKKQFARPDVLTRHLLIHSKDKPFTCSVCQKSFIRQSQLNTHFNKHHPEEKFVKSEPTEDLPECEVIVNEDVKESVRTKSEVGDEEITRVEGFETVWAKKVNNKEARTLSPRGAAVKSKPECEVSEAKPKCKKIKSEHKLIFDPVVVKSDSGKFDLVSIPEFPDIKIEVVRLGKHPYQCHKCYMDFRTKKAYDAHTPIHILCKQKRFPNRFRCNVCLREFYKKCDLKRHTRVHTGEKPWVCDICNNRFQQSFNLKKHLHTHVDLKPFHCRYCKKQFKRVDVLTRHLLTHSKDKPFTCTICQKSFIRHSQLYSHFMKHHPEEKFVMSEPTKDLPEREVTFNLKKHLRTLVDLKPFQCRYCKKQFRTADVLTRHLLIHSKDKPFTCSICQNGFIRQSQLNTHFVKHHPEEKIVKSEPTEDLPECEVTFSLKKHLCRKCKKQFRRADVLTRHLLTHSKDKPFTCPNCQKGFIRHLQLDTHFKKHHPNENFVKSEPSEELPECEVIVNEDVKGSVRTKSEDDIMCSVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00756010;
90% Identity: iTF_00756010;
80% Identity: iTF_00756010;