Gqui002051.1
Basic Information
- Insect
- Gonioctena quinquepunctata
- Gene Symbol
- Prdm15
- Assembly
- GCA_018342105.1
- Location
- JAFIRS010001790.1:24851-53612[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.69 4.4e+03 -1.0 0.0 27 48 248 269 242 271 0.88 2 6 0.56 3.5e+03 -0.7 0.1 26 48 428 450 421 452 0.87 3 6 0.097 6.2e+02 1.7 0.3 25 45 513 533 486 536 0.80 4 6 0.00023 1.5 10.1 0.0 23 46 566 589 553 594 0.86 5 6 5.4e-06 0.034 15.3 0.4 22 49 592 619 589 624 0.87 6 6 0.00013 0.8 10.9 0.0 19 48 629 658 625 660 0.92
Sequence Information
- Coding Sequence
- ATGGCGTTGGAAATGATATACCCAGGGGGCAATAAACAAGAAATTGATCAAATCTGTGGAATCTGCGGAGCAAATCATTTTCCTATGGATTGCAATGTGATTCGATTAGTTTCTCATATTCCAGATAAACCCATTCCGTCCAAAGCAAGACTGACCCTCCCTGATGATTTAGAAATAAGGACATTGGCAGACAACACTCACACAGTTGTTgccctatattttattgaaaaaggaATGCAGTTTGGCCCTTTGCAATCAAAAAAACTTTGTACACTTCTACCTGAAATCGACTTTCCATTGAAAGTTTTTTTTGACTCTGGGGAAGAATTTCCAGAGTACTTTCTGGATACAAGCAATGAAAATGAGTGCAGTTGGATGATGTTCATAGCTGCTGCAAGTAATTTTGAAGAACAAAATTTGATATGCTATCAGGATGGGGAAGATCTTTATTATGTAACTGTAAAAGACATATATGAAGGGGAACAATTGAAAGTTTGGTATTCCCCTTATTATGCTACCAAAATGCAAAGGTGCCTATTAAAACCAACTGTTCAACAAGATGAAGCTAAAAGTGATGATCAATCTGTGATGAATCAAGTTTCAgaatttttggttaaaaataagaaaaacgttACTACAAGAGACACATGGAGTTGCAAATATTGTGGAAAGATAGATAAAAATCTCACAGAATTTGCATTACATTTGGTGGGACATTATCGTGAAAAATCAGGAAGATTCTGCCAAATATGTAATGTGTCCTTCAAAACTTCGAAGGGGtatcaaaaacataaaaaaattgttcataatgACGATACAGTAAAAGTATTTGAATCAGAAAAAGATTTGGCACCTGATCCAAAGAAGACCCTTTCAAGTACACCAAAAGACAATTCTATGGGTGGACCTATGTTGAATGAGATTATGACAGATAGTTTGGATAATCCAAGTTTAGTGCTACCTCAAAATTATCTGAGTGAATTCGACTTGAGCAACATAGAAAATCAGGGCAAACTCTTGGGAAATGAAAATCTCCAATTGAACACAGAATCGATCCTGAACGAAAATGTGAAAGATTTGGAATCTTTCAACTTTGAACTGAAAGAGCCTGATAATGATCAATTGATGTGTGATATTTGTCTGAAAAGTTTCAAGAAACTCAAACTGCTCATTTTACACATGGCTCAGCATACAGGAAGACATACTTGCCATGAGTGCAATAAGGTATTCGCGCGTAAGGAAAATTTCCTCTTTCACTCTTGCAAATCCTACTACAAGATCAAGTGTACTCTGTGTGACAAgctctttttccaaaaaaaatatctcgCTCAacacttgaagtatgttcataacCGTACATACACTTGCAAGCGGTGCAATAATTGGTACGATTCAAAAGAAAGTCTACAGAACCACCGCTGTACGCAACCTCCGCCGGAAAAGAAAATGATTTCATGTACTAAATGTTCCAAGCAATTCACACTCTGGAAAAATTTGAGGGTGCATATGAGGGAGCACGAACGCCCCAAAGAAAAGTACACTTGCCCTACATGTAGTATGGTTTTGAATTCGAGGAAATGTTATTTGAAACATACCCAACTCCACGAAGGAAATGTTCATCAGTGTGAACAATGCCCGAAAGTTTTCTCGAGAAAAGATACATTGAAGGAACATATAAGGAAAACCCACCATGGTGAGGAGGCAACTTGTGAAATTTGTAAAAAAGTTGTGAAATCAAAAAAGCTGCTGAAACATCACATGGAAACCCATGATGAGAAAAAACTGAAATGCACAGAGTGTCCTGCAGCTTTCAAGCAAAACAAAAATCTGAGGAGACACATAAAACTGTGCCATATGCTCAATAAAGAAATCCAAAGTCTGTTTTCTGATACAGAAAAACCATATTCTTGCCCTAAATGTGATAAGAAAATGAAACTTAGTCAGTCTGTTAAAAGACACATTGAAAGATTCCATCCAGAGTTTGAATACAATTATGAGAATGTCAAACGGAAAAGAGTGAAAGACAAGAAAGCTCCTGATTTAGAAAAGGTTGAAGATCCGGTTATGGACTTGAAACAGACCATAGAAAACATGAATTTCAGTACTGATGACTTGACTTCTATCAACAcggaaattaatattgaaatcgaAAAATTACTCAATGATCCTCAAAATTTTTCAACTGATACCAATGATATGTTGGTTGAGAGCTTGATAAACAGCGTTGTGAAAGATGAATATATGAATAAGCCGGTTTTGTTCAAGCATGAGGATGTTTTCTTGTCCATGCCAGTTTTAGATATGGATGATAGTATAAGTTTGGGAAACAAATCATTCCTATTGGATAATGAAGGAAACAAACCTTTCATGCTGGATAGTGAATCTTTCTGA
- Protein Sequence
- MALEMIYPGGNKQEIDQICGICGANHFPMDCNVIRLVSHIPDKPIPSKARLTLPDDLEIRTLADNTHTVVALYFIEKGMQFGPLQSKKLCTLLPEIDFPLKVFFDSGEEFPEYFLDTSNENECSWMMFIAAASNFEEQNLICYQDGEDLYYVTVKDIYEGEQLKVWYSPYYATKMQRCLLKPTVQQDEAKSDDQSVMNQVSEFLVKNKKNVTTRDTWSCKYCGKIDKNLTEFALHLVGHYREKSGRFCQICNVSFKTSKGYQKHKKIVHNDDTVKVFESEKDLAPDPKKTLSSTPKDNSMGGPMLNEIMTDSLDNPSLVLPQNYLSEFDLSNIENQGKLLGNENLQLNTESILNENVKDLESFNFELKEPDNDQLMCDICLKSFKKLKLLILHMAQHTGRHTCHECNKVFARKENFLFHSCKSYYKIKCTLCDKLFFQKKYLAQHLKYVHNRTYTCKRCNNWYDSKESLQNHRCTQPPPEKKMISCTKCSKQFTLWKNLRVHMREHERPKEKYTCPTCSMVLNSRKCYLKHTQLHEGNVHQCEQCPKVFSRKDTLKEHIRKTHHGEEATCEICKKVVKSKKLLKHHMETHDEKKLKCTECPAAFKQNKNLRRHIKLCHMLNKEIQSLFSDTEKPYSCPKCDKKMKLSQSVKRHIERFHPEFEYNYENVKRKRVKDKKAPDLEKVEDPVMDLKQTIENMNFSTDDLTSINTEINIEIEKLLNDPQNFSTDTNDMLVESLINSVVKDEYMNKPVLFKHEDVFLSMPVLDMDDSISLGNKSFLLDNEGNKPFMLDSESF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00756066;
- 90% Identity
- iTF_00756066;
- 80% Identity
- iTF_00756066;